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The map label for this gene is ompW [H]

Identifier: 116688424

GI number: 116688424

Start: 446445

End: 447176

Strand: Reverse

Name: ompW [H]

Synonym: Bcen2424_0400

Alternate gene names: 116688424

Gene position: 447176-446445 (Counterclockwise)

Preceding gene: 116688430

Following gene: 116688411

Centisome position: 12.84

GC content: 62.98

Gene sequence:

>732_bases
ATGAAACGAAAACTGGCCATTACGGGGGCCGCAGCGCTCGCATTCACGTTCGCGGGCGGTACGGCACATGCACAATCCGC
AGGTGATTTCTACGTCAGCACCGGCTGGCTGCACCTTTCGCCGCAGGACAGCAGTGACCCGCTGTTCGTCTACCGCGTAG
GCGGCACGCCCATCAATCAATCGATTCCCAACACCGGCGCCGGCATCAACGACGCCGACACGCTGGGGCTCGCAGCAGGC
TACTTCGTCACCGACCATATCTCCACCGAGCTCGTGATGGGGATCCCGCCGAAGTTCGACATCACCGGCAAGGGTCAGTT
CGACAGATTCGGCGTACTCGGCCGTGCATACCAGTGGAGCCCTGCCGTCCTGCTTCGCTACCACTTCAACGACGCCAATG
CGAAGTTCCGTCCGTATGTCGGCGTCGGTGCGACGTACGTCTGGTTCACCGGCGCCAAGATCACCAACAGCGCGTTCGAG
AACGGCGTGCTCGGCGGCCCGACCAGCGCGACGACCAGCAACCAGTGGGCGCCCGTGCTCAACGCCGGCTTCACGTACAA
CTTCACGAAACACTGGTTCGCAGGCCTGTCACTGTCGTACATCCCGGTCAGCGTGACCGCGACGTTCACGACGGCCCGCC
GGACGCCGGTCGGGACGCTGACGGAAACGTCGAAGGCCCACATCTCGCTGAACCCGATCGTCACGTACCTGAACCTCGGC
TACCGCTTCTAA

Upstream 100 bases:

>100_bases
ACGGTCGTGCGAATCCTAGGGAGAAAACTCTAACTTACGAGCTTGTTTGGTTTTAAACGCAGTCGTCATAATGAGCACGC
CTTTGATCGGAGGAGACACA

Downstream 100 bases:

>100_bases
GCGTAGTCGAATATTTGGGGAATGGTTAATCCTGCTGCAATTTGTAGCGGATTTTTCCTGGCGTAACGTCTCCACGATGC
AAAACGCCCCGGCGCTCAGC

Product: OmpW family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MKRKLAITGAAALAFTFAGGTAHAQSAGDFYVSTGWLHLSPQDSSDPLFVYRVGGTPINQSIPNTGAGINDADTLGLAAG
YFVTDHISTELVMGIPPKFDITGKGQFDRFGVLGRAYQWSPAVLLRYHFNDANAKFRPYVGVGATYVWFTGAKITNSAFE
NGVLGGPTSATTSNQWAPVLNAGFTYNFTKHWFAGLSLSYIPVSVTATFTTARRTPVGTLTETSKAHISLNPIVTYLNLG
YRF

Sequences:

>Translated_243_residues
MKRKLAITGAAALAFTFAGGTAHAQSAGDFYVSTGWLHLSPQDSSDPLFVYRVGGTPINQSIPNTGAGINDADTLGLAAG
YFVTDHISTELVMGIPPKFDITGKGQFDRFGVLGRAYQWSPAVLLRYHFNDANAKFRPYVGVGATYVWFTGAKITNSAFE
NGVLGGPTSATTSNQWAPVLNAGFTYNFTKHWFAGLSLSYIPVSVTATFTTARRTPVGTLTETSKAHISLNPIVTYLNLG
YRF
>Mature_243_residues
MKRKLAITGAAALAFTFAGGTAHAQSAGDFYVSTGWLHLSPQDSSDPLFVYRVGGTPINQSIPNTGAGINDADTLGLAAG
YFVTDHISTELVMGIPPKFDITGKGQFDRFGVLGRAYQWSPAVLLRYHFNDANAKFRPYVGVGATYVWFTGAKITNSAFE
NGVLGGPTSATTSNQWAPVLNAGFTYNFTKHWFAGLSLSYIPVSVTATFTTARRTPVGTLTETSKAHISLNPIVTYLNLG
YRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=243, Percent_Identity=26.3374485596708, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 26093; Mature: 26093

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKLAITGAAALAFTFAGGTAHAQSAGDFYVSTGWLHLSPQDSSDPLFVYRVGGTPINQ
CCCEEEEECCEEEEEEECCCCCCCCCCCCEEEEECEEEECCCCCCCCEEEEEECCCCCCC
SIPNTGAGINDADTLGLAAGYFVTDHISTELVMGIPPKFDITGKGQFDRFGVLGRAYQWS
CCCCCCCCCCCCCHHHEEECEEEECCCCEEEEECCCCCEEECCCCCCCCCCCCCCEEECC
PAVLLRYHFNDANAKFRPYVGVGATYVWFTGAKITNSAFENGVLGGPTSATTSNQWAPVL
CEEEEEEEECCCCCEECEEECCCEEEEEEECCEEECCHHHCCCCCCCCCCCCCCCCCEEE
NAGFTYNFTKHWFAGLSLSYIPVSVTATFTTARRTPVGTLTETSKAHISLNPIVTYLNLG
ECCEEEECHHHHHCCCEEEEEEEEEEEEEEECCCCCCCCEECCCCEEEEECCEEEEEECC
YRF
CCC
>Mature Secondary Structure
MKRKLAITGAAALAFTFAGGTAHAQSAGDFYVSTGWLHLSPQDSSDPLFVYRVGGTPINQ
CCCEEEEECCEEEEEEECCCCCCCCCCCCEEEEECEEEECCCCCCCCEEEEEECCCCCCC
SIPNTGAGINDADTLGLAAGYFVTDHISTELVMGIPPKFDITGKGQFDRFGVLGRAYQWS
CCCCCCCCCCCCCHHHEEECEEEECCCCEEEEECCCCCEEECCCCCCCCCCCCCCEEECC
PAVLLRYHFNDANAKFRPYVGVGATYVWFTGAKITNSAFENGVLGGPTSATTSNQWAPVL
CEEEEEEEECCCCCEECEEECCCEEEEEEECCEEECCHHHCCCCCCCCCCCCCCCCCEEE
NAGFTYNFTKHWFAGLSLSYIPVSVTATFTTARRTPVGTLTETSKAHISLNPIVTYLNLG
ECCEEEECHHHHHCCCEEEEEEEEEEEEEEECCCCCCCCEECCCCEEEEECCEEEEEECC
YRF
CCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]