Click here to switch to the map view.

The map label for this gene is yedY [H]

Identifier: 116688407

GI number: 116688407

Start: 428994

End: 429989

Strand: Direct

Name: yedY [H]

Synonym: Bcen2424_0383

Alternate gene names: 116688407

Gene position: 428994-429989 (Clockwise)

Preceding gene: 116688406

Following gene: 116688408

Centisome position: 12.31

GC content: 64.86

Gene sequence:

>996_bases
ATGTGGATCAAACGCCCTTTGCGTAACGTACTGACCGGCGCGGATATCGCGTCGAGCGAGATCACGCCGCGCGCGGTATT
CGAGAACCGGCGGCGCGTGTTGCAGGCCGCCGGCCTCGCGGCGGCGGGTGGCCTGTTCGGCACCAGCGGCGCGGCGCTCG
CCGCGTATGCGTCGCCCGACTCGCGAGCGGCGAAGCTCGCGGCAAAGACCAATCCGAAATTCGTCGCCATCGACAAGGTG
ACGCCGTTCAAGGACATCACGTCCTACAACAACTTCTACGAATTCGGCACCGACAAGAGCGACCCGGCGCAGAACGCCGG
CACGCTGCGGCCGCGCCCGTGGCGGGTGAGCGTCGAGGGCGAGGTGCAGCACCCGAAGGTGTTCGATCTCGACGAGCTGC
TGAAGCTCGCGCCGCTCGAGGAGCGCGTGTACCGGCTGCGCTGCGTCGAGGGTTGGTCGATGGTGATCCCGTGGATCGGC
GTGCCGCTGTCCGAGCTGATCAAGCGCGTGCAGCCGACCGGCAACGCGAAATACGTGCAGTTCATCACGCTGGCCGATCC
GTCGCAGATGCCGGGCCTGTCGACGCCCGTGCTCGACTGGCCGTATTCGGAAGGGCTGCGGATGGACGAGGCGATGAATC
CGCTGACGCTGCTGACGATGGGCGTCTACGGGCAGGTGCTGCCGAACCAGAATGGCGCGCCGGTGCGGATCGTCGTGCCG
TGGAAGTACGGCTTCAAGAGTGCGAAGTCGCTCGTGAAGATCCGCTTCGTCGACAAGCAGCCGAAGACGAGCTGGAACAC
GTATGCGGCGAACGAGTACGGCTTTTACTCGAACGTGAACCCGAACGTCGATCATCCGCGCTGGAGCCAGGCCACCGAGC
GGCGCATCGGCGAGGACGGCTTCTTCACGCCGAAGCGCAAGACGCTGATGTTCAACGGCTACGGCGATCTGGTCGCGTCG
ATGTATCAGGGCATGGACCTGAAGAAGAACTTCTGA

Upstream 100 bases:

>100_bases
TTTTGTAACGGGCGGGCGAACCGGGCGTCGAACGGCGCGTGACGGGCCGGGTCGAACGCTGATGAAGCATGCGCGCCGCG
CATGCGGGAGGAGCTGCACG

Downstream 100 bases:

>100_bases
GGGCGACCGTGAGAAACGACATGCCGACTTCGACGCTCACGCCTGCGCGCGCCGCCAGCGCCGGGCCGGCCGCACGCACG
GCGCGCGCGGGTGGGAGCCG

Product: putative sulfite oxidase subunit YedY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MWIKRPLRNVLTGADIASSEITPRAVFENRRRVLQAAGLAAAGGLFGTSGAALAAYASPDSRAAKLAAKTNPKFVAIDKV
TPFKDITSYNNFYEFGTDKSDPAQNAGTLRPRPWRVSVEGEVQHPKVFDLDELLKLAPLEERVYRLRCVEGWSMVIPWIG
VPLSELIKRVQPTGNAKYVQFITLADPSQMPGLSTPVLDWPYSEGLRMDEAMNPLTLLTMGVYGQVLPNQNGAPVRIVVP
WKYGFKSAKSLVKIRFVDKQPKTSWNTYAANEYGFYSNVNPNVDHPRWSQATERRIGEDGFFTPKRKTLMFNGYGDLVAS
MYQGMDLKKNF

Sequences:

>Translated_331_residues
MWIKRPLRNVLTGADIASSEITPRAVFENRRRVLQAAGLAAAGGLFGTSGAALAAYASPDSRAAKLAAKTNPKFVAIDKV
TPFKDITSYNNFYEFGTDKSDPAQNAGTLRPRPWRVSVEGEVQHPKVFDLDELLKLAPLEERVYRLRCVEGWSMVIPWIG
VPLSELIKRVQPTGNAKYVQFITLADPSQMPGLSTPVLDWPYSEGLRMDEAMNPLTLLTMGVYGQVLPNQNGAPVRIVVP
WKYGFKSAKSLVKIRFVDKQPKTSWNTYAANEYGFYSNVNPNVDHPRWSQATERRIGEDGFFTPKRKTLMFNGYGDLVAS
MYQGMDLKKNF
>Mature_331_residues
MWIKRPLRNVLTGADIASSEITPRAVFENRRRVLQAAGLAAAGGLFGTSGAALAAYASPDSRAAKLAAKTNPKFVAIDKV
TPFKDITSYNNFYEFGTDKSDPAQNAGTLRPRPWRVSVEGEVQHPKVFDLDELLKLAPLEERVYRLRCVEGWSMVIPWIG
VPLSELIKRVQPTGNAKYVQFITLADPSQMPGLSTPVLDWPYSEGLRMDEAMNPLTLLTMGVYGQVLPNQNGAPVRIVVP
WKYGFKSAKSLVKIRFVDKQPKTSWNTYAANEYGFYSNVNPNVDHPRWSQATERRIGEDGFFTPKRKTLMFNGYGDLVAS
MYQGMDLKKNF

Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase

COG id: COG2041

COG function: function code R; Sulfite oxidase and related enzymes

Gene ontology:

Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yedY family [H]

Homologues:

Organism=Escherichia coli, GI1788282, Length=328, Percent_Identity=51.5243902439024, Blast_Score=329, Evalue=1e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000572
- InterPro:   IPR006311
- InterPro:   IPR022867 [H]

Pfam domain/function: PF00174 Oxidored_molyb [H]

EC number: NA

Molecular weight: Translated: 37002; Mature: 37002

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIKRPLRNVLTGADIASSEITPRAVFENRRRVLQAAGLAAAGGLFGTSGAALAAYASPD
CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCC
SRAAKLAAKTNPKFVAIDKVTPFKDITSYNNFYEFGTDKSDPAQNAGTLRPRPWRVSVEG
HHHHHHHCCCCCCEEEEECCCCHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC
EVQHPKVFDLDELLKLAPLEERVYRLRCVEGWSMVIPWIGVPLSELIKRVQPTGNAKYVQ
CCCCCCEECHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCEEEE
FITLADPSQMPGLSTPVLDWPYSEGLRMDEAMNPLTLLTMGVYGQVLPNQNGAPVRIVVP
EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHEEEHHHHHEECCCCCCCCEEEEEE
WKYGFKSAKSLVKIRFVDKQPKTSWNTYAANEYGFYSNVNPNVDHPRWSQATERRIGEDG
CCCCHHHHCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
FFTPKRKTLMFNGYGDLVASMYQGMDLKKNF
CCCCCCCEEEECCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MWIKRPLRNVLTGADIASSEITPRAVFENRRRVLQAAGLAAAGGLFGTSGAALAAYASPD
CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCC
SRAAKLAAKTNPKFVAIDKVTPFKDITSYNNFYEFGTDKSDPAQNAGTLRPRPWRVSVEG
HHHHHHHCCCCCCEEEEECCCCHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC
EVQHPKVFDLDELLKLAPLEERVYRLRCVEGWSMVIPWIGVPLSELIKRVQPTGNAKYVQ
CCCCCCEECHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCEEEE
FITLADPSQMPGLSTPVLDWPYSEGLRMDEAMNPLTLLTMGVYGQVLPNQNGAPVRIVVP
EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHEEEHHHHHEECCCCCCCCEEEEEE
WKYGFKSAKSLVKIRFVDKQPKTSWNTYAANEYGFYSNVNPNVDHPRWSQATERRIGEDG
CCCCHHHHCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
FFTPKRKTLMFNGYGDLVASMYQGMDLKKNF
CCCCCCCEEEECCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Mo [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA