Click here to switch to the map view.

The map label for this gene is secY [H]

Identifier: 116688392

GI number: 116688392

Start: 414959

End: 416308

Strand: Direct

Name: secY [H]

Synonym: Bcen2424_0368

Alternate gene names: 116688392

Gene position: 414959-416308 (Clockwise)

Preceding gene: 116688391

Following gene: 116688393

Centisome position: 11.91

GC content: 58.89

Gene sequence:

>1350_bases
TTGGCTAACAGCCCGAGTCTTGCAAAACCCGGTCGAAGCACGGCGAAATTCGGCGATCTGCGCCGGCGAGCGATGTTCCT
GCTCCTGGCGCTGATCGTCTATCGCATCGGCGCGCACATTCCCGTGCCGGGCATCGATCCGGATCAACTGGCTAAGCTGT
TCCAGAGCCAGGCGGGCGGCATCCTGGGCATGTTCAACATGTTCTCGGGTGGCGCACTGTCCCGCTTCACGATCTTTGCG
CTGGGGATCATGCCGTACATCTCGGCGTCGATCATCATGCAGTTGCTGGCGATCGTTTCGCCGCAGCTCGAGGCGCTGAA
GAAGGAAGGGCAGGCAGGGCAACGGAAGATCACGCAGTACACGCGGTATTTCACCGTGGTGCTCGCGACCTTCCAGGCAT
TCGGTATCGCGGCCGCGCTGGAAAACCAGCCGGGCCTCGTCACCGATCCCGGCATGCTGTTCCGTCTGACGACGGTCGTG
ACGCTGGTGACGGGCACGATGTTCCTGATGTGGCTCGGCGAGCAGATTACCGAGCGTGGTCTGGGCAACGGTATCTCGAT
CATCATCTTCGGCGGGATCGCAGCAGGATTCCCGAATGCCGTGGGTGGGTTGTTCGAGCTGGTGCGTACGGGTTCGATGA
GCATCATTTCGGCGATCATCATCGTCGTTCTGATCGCCGCGGTGACTTACCTGGTCGTGTTCATCGAACGCGGTCAGCGC
AAGATCCTCGTGAACTACGCGAAGCGCCAGGTCGGCAACAAGATCTACGGTGGGCAGTCGTCGCATCTGCCGCTGAAGCT
GAACATGTCGGGCGTGATTCCGCCGATCTTTGCATCGTCGATCATTCTGTTCCCGGCAACGATTCTCGGCTGGTTCAGTA
CCGGTCAGCCGACGGGAAGCTGGATTTCCAATACGTTGCATAACGTTGCGGAAGCGCTGAAGCCGGGCCAGCCGGTCTAT
GTGCTGCTGTACACGCTGGCAATCGTGTTTTTCTGCTTCTTCTACACCGCACTGGTGTTCAACAGCAGGGAGACCGCGGA
CAACCTGAAGAAGAGCGGCGCGTTTGTTCCGGGCATTCGTCCGGGCGATCAGACCGCACGATATATCGACCGCATCCTCA
CGCGTCTGACGCTGGCCGGTGCGATCTACATCGTCTTCGTGTGTCTGCTGCCGGAATTCCTGGTGCTGCGCTGGAACGTG
CCGTTTTATTTTGGTGGAACGTCGCTGCTGATCATTGTCGTCGTCACGATGGACTTTATGGCGCAGGTGCAGTCGTACGT
TATGTCGCAACAGTATGAGTCACTGCTCAAGAAGGCTAACTTCAAGGGCGGCAACATCCCGATGCGTTGA

Upstream 100 bases:

>100_bases
TGCCACCAAGGGTGCGCGCGCTGCGATCGAAGCGGCTGGCGGTTCGTTCGCCGAGTGACACGCGTAGCGCGTCGTCACTT
GCATTCATCGGAGAAGGTAC

Downstream 100 bases:

>100_bases
AAGGACTATGGCCAAAGACGATGTAATCCAGATGCAGGGTGAGGTGATTGAAAACCTCCCGAATGCGACCTTCCGTGTGA
AGCTGGAAAACGGCCATGTC

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MANSPSLAKPGRSTAKFGDLRRRAMFLLLALIVYRIGAHIPVPGIDPDQLAKLFQSQAGGILGMFNMFSGGALSRFTIFA
LGIMPYISASIIMQLLAIVSPQLEALKKEGQAGQRKITQYTRYFTVVLATFQAFGIAAALENQPGLVTDPGMLFRLTTVV
TLVTGTMFLMWLGEQITERGLGNGISIIIFGGIAAGFPNAVGGLFELVRTGSMSIISAIIIVVLIAAVTYLVVFIERGQR
KILVNYAKRQVGNKIYGGQSSHLPLKLNMSGVIPPIFASSIILFPATILGWFSTGQPTGSWISNTLHNVAEALKPGQPVY
VLLYTLAIVFFCFFYTALVFNSRETADNLKKSGAFVPGIRPGDQTARYIDRILTRLTLAGAIYIVFVCLLPEFLVLRWNV
PFYFGGTSLLIIVVVTMDFMAQVQSYVMSQQYESLLKKANFKGGNIPMR

Sequences:

>Translated_449_residues
MANSPSLAKPGRSTAKFGDLRRRAMFLLLALIVYRIGAHIPVPGIDPDQLAKLFQSQAGGILGMFNMFSGGALSRFTIFA
LGIMPYISASIIMQLLAIVSPQLEALKKEGQAGQRKITQYTRYFTVVLATFQAFGIAAALENQPGLVTDPGMLFRLTTVV
TLVTGTMFLMWLGEQITERGLGNGISIIIFGGIAAGFPNAVGGLFELVRTGSMSIISAIIIVVLIAAVTYLVVFIERGQR
KILVNYAKRQVGNKIYGGQSSHLPLKLNMSGVIPPIFASSIILFPATILGWFSTGQPTGSWISNTLHNVAEALKPGQPVY
VLLYTLAIVFFCFFYTALVFNSRETADNLKKSGAFVPGIRPGDQTARYIDRILTRLTLAGAIYIVFVCLLPEFLVLRWNV
PFYFGGTSLLIIVVVTMDFMAQVQSYVMSQQYESLLKKANFKGGNIPMR
>Mature_448_residues
ANSPSLAKPGRSTAKFGDLRRRAMFLLLALIVYRIGAHIPVPGIDPDQLAKLFQSQAGGILGMFNMFSGGALSRFTIFAL
GIMPYISASIIMQLLAIVSPQLEALKKEGQAGQRKITQYTRYFTVVLATFQAFGIAAALENQPGLVTDPGMLFRLTTVVT
LVTGTMFLMWLGEQITERGLGNGISIIIFGGIAAGFPNAVGGLFELVRTGSMSIISAIIIVVLIAAVTYLVVFIERGQRK
ILVNYAKRQVGNKIYGGQSSHLPLKLNMSGVIPPIFASSIILFPATILGWFSTGQPTGSWISNTLHNVAEALKPGQPVYV
LLYTLAIVFFCFFYTALVFNSRETADNLKKSGAFVPGIRPGDQTARYIDRILTRLTLAGAIYIVFVCLLPEFLVLRWNVP
FYFGGTSLLIIVVVTMDFMAQVQSYVMSQQYESLLKKANFKGGNIPMR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=450, Percent_Identity=65.3333333333333, Blast_Score=529, Evalue=1e-151,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48997; Mature: 48866

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANSPSLAKPGRSTAKFGDLRRRAMFLLLALIVYRIGAHIPVPGIDPDQLAKLFQSQAGG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
ILGMFNMFSGGALSRFTIFALGIMPYISASIIMQLLAIVSPQLEALKKEGQAGQRKITQY
CEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHH
TRYFTVVLATFQAFGIAAALENQPGLVTDPGMLFRLTTVVTLVTGTMFLMWLGEQITERG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LGNGISIIIFGGIAAGFPNAVGGLFELVRTGSMSIISAIIIVVLIAAVTYLVVFIERGQR
CCCCCEEEEECCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
KILVNYAKRQVGNKIYGGQSSHLPLKLNMSGVIPPIFASSIILFPATILGWFSTGQPTGS
HHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
WISNTLHNVAEALKPGQPVYVLLYTLAIVFFCFFYTALVFNSRETADNLKKSGAFVPGIR
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
PGDQTARYIDRILTRLTLAGAIYIVFVCLLPEFLVLRWNVPFYFGGTSLLIIVVVTMDFM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHH
AQVQSYVMSQQYESLLKKANFKGGNIPMR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ANSPSLAKPGRSTAKFGDLRRRAMFLLLALIVYRIGAHIPVPGIDPDQLAKLFQSQAGG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
ILGMFNMFSGGALSRFTIFALGIMPYISASIIMQLLAIVSPQLEALKKEGQAGQRKITQY
CEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHH
TRYFTVVLATFQAFGIAAALENQPGLVTDPGMLFRLTTVVTLVTGTMFLMWLGEQITERG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LGNGISIIIFGGIAAGFPNAVGGLFELVRTGSMSIISAIIIVVLIAAVTYLVVFIERGQR
CCCCCEEEEECCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
KILVNYAKRQVGNKIYGGQSSHLPLKLNMSGVIPPIFASSIILFPATILGWFSTGQPTGS
HHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
WISNTLHNVAEALKPGQPVYVLLYTLAIVFFCFFYTALVFNSRETADNLKKSGAFVPGIR
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
PGDQTARYIDRILTRLTLAGAIYIVFVCLLPEFLVLRWNVPFYFGGTSLLIIVVVTMDFM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHH
AQVQSYVMSQQYESLLKKANFKGGNIPMR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9322765; 10952301 [H]