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The map label for this gene is rlpA [C]

Identifier: 116688310

GI number: 116688310

Start: 328700

End: 329341

Strand: Direct

Name: rlpA [C]

Synonym: Bcen2424_0286

Alternate gene names: 116688310

Gene position: 328700-329341 (Clockwise)

Preceding gene: 116688306

Following gene: 116688311

Centisome position: 9.43

GC content: 64.95

Gene sequence:

>642_bases
ATGCGGCCCGAACCAGAAGGCGACACGTCGATGAATTTACGTTTTCCGAGCCGATTCGGAACCATTGCATTGTTTTTTGC
GCTGACGGGCTGTGCGGTGCCATCCAGCCAGACCACCGGCAGCGTGAACCAGAAGAAGGCCGTCGACAAGACGGCCGCCG
CAGCGAAGGCGGACGACGACAAGCAGCCGCTCAGTTTCGATTCCGCGCTGGCATCGATGCCGGCCGCCGACAGCAAGGAC
GCGAAGAAGTCGTCGCTGGCGGACGCCGAGCCGATCGACGGCAAGGATGTGTCCGAGTTCCGCCAGAGCGGCCGCGCATC
GTGGTACGGGCGGGATTTCCACGGCCGCCGCACCGCGAACGGCGAACGCTTCAACATGAACGCGTTCACCGCCGCGCACC
GCACGCTGCCGCTGTCGTCGTACATCAAGGTGACGAACGCCTCGACCGGCAAGTGGGTCGTCGTGAAGGTCAACGATCGC
GGGCCGTTCAAGCGTGGCCGCGTACTCGACCTGTCGTATGCGGCGGCCAAGGTGATCGGCCTCGTGCACGCCGGCACGGG
CCGCGTGAAGATCGAAGGACTGTCGCCGCAGGAAGCGCGCGAGGCCCGCGACGAAATGCTCGCGTCGATCTCGGCGAAAT
AA

Upstream 100 bases:

>100_bases
AAGGCCGCGCCCATGCTAGCCGCCTGCTCGCATTCGAGCGGGGCGTGCACGCATTTGCCGTCCGGGCCGCATCTCTGCGT
TGTGAAGCAGCGTTGTATCG

Downstream 100 bases:

>100_bases
CCGGCGAAATAATCCGGCGGATCGTCCGCTCATGCGCAAAGGGCTGCCTTCCGGCAGCCCTTTGTCGTTGTGCGCCCAGC
ATGGGCGCACTCCTGCGGGT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MRPEPEGDTSMNLRFPSRFGTIALFFALTGCAVPSSQTTGSVNQKKAVDKTAAAAKADDDKQPLSFDSALASMPAADSKD
AKKSSLADAEPIDGKDVSEFRQSGRASWYGRDFHGRRTANGERFNMNAFTAAHRTLPLSSYIKVTNASTGKWVVVKVNDR
GPFKRGRVLDLSYAAAKVIGLVHAGTGRVKIEGLSPQEAREARDEMLASISAK

Sequences:

>Translated_213_residues
MRPEPEGDTSMNLRFPSRFGTIALFFALTGCAVPSSQTTGSVNQKKAVDKTAAAAKADDDKQPLSFDSALASMPAADSKD
AKKSSLADAEPIDGKDVSEFRQSGRASWYGRDFHGRRTANGERFNMNAFTAAHRTLPLSSYIKVTNASTGKWVVVKVNDR
GPFKRGRVLDLSYAAAKVIGLVHAGTGRVKIEGLSPQEAREARDEMLASISAK
>Mature_213_residues
MRPEPEGDTSMNLRFPSRFGTIALFFALTGCAVPSSQTTGSVNQKKAVDKTAAAAKADDDKQPLSFDSALASMPAADSKD
AKKSSLADAEPIDGKDVSEFRQSGRASWYGRDFHGRRTANGERFNMNAFTAAHRTLPLSSYIKVTNASTGKWVVVKVNDR
GPFKRGRVLDLSYAAAKVIGLVHAGTGRVKIEGLSPQEAREARDEMLASISAK

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=82, Percent_Identity=46.3414634146341, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 22897; Mature: 22897

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPEPEGDTSMNLRFPSRFGTIALFFALTGCAVPSSQTTGSVNQKKAVDKTAAAAKADDD
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
KQPLSFDSALASMPAADSKDAKKSSLADAEPIDGKDVSEFRQSGRASWYGRDFHGRRTAN
CCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
GERFNMNAFTAAHRTLPLSSYIKVTNASTGKWVVVKVNDRGPFKRGRVLDLSYAAAKVIG
CCEEECHHHHHHHHCCCHHHHEEEECCCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHH
LVHAGTGRVKIEGLSPQEAREARDEMLASISAK
HEECCCCEEEEECCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRPEPEGDTSMNLRFPSRFGTIALFFALTGCAVPSSQTTGSVNQKKAVDKTAAAAKADDD
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
KQPLSFDSALASMPAADSKDAKKSSLADAEPIDGKDVSEFRQSGRASWYGRDFHGRRTAN
CCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
GERFNMNAFTAAHRTLPLSSYIKVTNASTGKWVVVKVNDRGPFKRGRVLDLSYAAAKVIG
CCEEECHHHHHHHHCCCHHHHEEEECCCCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHH
LVHAGTGRVKIEGLSPQEAREARDEMLASISAK
HEECCCCEEEEECCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]