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The map label for this gene is flhC [H]

Identifier: 116688276

GI number: 116688276

Start: 292011

End: 292565

Strand: Direct

Name: flhC [H]

Synonym: Bcen2424_0252

Alternate gene names: 116688276

Gene position: 292011-292565 (Clockwise)

Preceding gene: 116688275

Following gene: 116688277

Centisome position: 8.38

GC content: 65.41

Gene sequence:

>555_bases
ATGGCAAGCAAAAGCGTCGTGATCGAGGTGAAGGAAATCACCCTCGCCATCGAACTGATCGAACTGGGCGCCCGGCTGCA
GCTGCTGGAGGCGGAGACGAGCCTGTCGCGGGACCGTCTGATCAAGCTGTACAAGGAACTGAAGGGCGTGTCGCCGCCGA
AGGGGATGCTGCCGTTCTCGACCGACTGGTTCATGACGTGGCTGCCGAACATCCACTCGTCGCTGTTCTACAACATCTAC
CGGTTCATGCAGGACCACGGCCGCTGCGACACGATCCAGTCGATCGTGAAGGCGTACCGGCTCTATCTGGAGCACGTGAA
CCTGTCCGGCGACGAGGCCGCGCTGAGCCTCACGCGGGCGTGGACGCTGGTGCGCTTCTTCGATTCGGGGATGCTGCAGA
TGACCCCGTGCACGCGCTGCGGCGGCCACTTCGTCGCGCATGCGCATGATCCGCATCAAGGTTTCGTGTGTGGCCTGTGC
CAGCCGCCGTCGCGCGCCGGCAAGACCCGCAAGGCCGCCGCCGCGCGCGCCGAACTGGCCGCCGCCGTGGCCTGA

Upstream 100 bases:

>100_bases
TCCGCTGATCCATCCCGCCTTGCGTTTGTCCCGGCGCGCCGCGCCGGCCGGCAGCGTGTTGGCCATTCATTCGAATAACG
TCAAGCGGACGGTTATCACC

Downstream 100 bases:

>100_bases
ACGCCGGGCCGGGCAAGGCCGGACGGGGCGCAAGCGGGGCCCGAGTGGCGCCCCACGGGCCGCGCGAATCGTCCGCGCAT
TGCTGGTAAACACCGTCGGG

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWLPNIHSSLFYNIY
RFMQDHGRCDTIQSIVKAYRLYLEHVNLSGDEAALSLTRAWTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPHQGFVCGLC
QPPSRAGKTRKAAAARAELAAAVA

Sequences:

>Translated_184_residues
MASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWLPNIHSSLFYNIY
RFMQDHGRCDTIQSIVKAYRLYLEHVNLSGDEAALSLTRAWTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPHQGFVCGLC
QPPSRAGKTRKAAAARAELAAAVA
>Mature_183_residues
ASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWLPNIHSSLFYNIYR
FMQDHGRCDTIQSIVKAYRLYLEHVNLSGDEAALSLTRAWTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPHQGFVCGLCQ
PPSRAGKTRKAAAARAELAAAVA

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=179, Percent_Identity=58.1005586592179, Blast_Score=229, Evalue=7e-62,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 20537; Mature: 20406

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFS
CCCCEEEEEHHHHHHHHHHHHHCCHHEEEHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWLPNIHSSLFYNIYRFMQDHGRCDTIQSIVKAYRLYLEHVNLSGDEAALSLTRA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
WTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPHQGFVCGLCQPPSRAGKTRKAAAARAELA
HHHHHHHHCCCEEECCCCCCCCCEEEECCCCCCCCEEECCCCCHHCCCHHHHHHHHHHHH
AAVA
HHCC
>Mature Secondary Structure 
ASKSVVIEVKEITLAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFS
CCCEEEEEHHHHHHHHHHHHHCCHHEEEHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWLPNIHSSLFYNIYRFMQDHGRCDTIQSIVKAYRLYLEHVNLSGDEAALSLTRA
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
WTLVRFFDSGMLQMTPCTRCGGHFVAHAHDPHQGFVCGLCQPPSRAGKTRKAAAARAELA
HHHHHHHHCCCEEECCCCCCCCCEEEECCCCCCCCEEECCCCCHHCCCHHHHHHHHHHHH
AAVA
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11060496 [H]