| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688245
Identifier: 116688245
GI number: 116688245
Start: 252818
End: 255043
Strand: Direct
Name: 116688245
Synonym: Bcen2424_0221
Alternate gene names: NA
Gene position: 252818-255043 (Clockwise)
Preceding gene: 116688244
Following gene: 116688249
Centisome position: 7.26
GC content: 58.81
Gene sequence:
>2226_bases ATGGCAACTCGCAAGGGTTTCTTGGATGCCGAGGGCGAAGAAAAAACGCTCAGCGCACCGACGATGGCGCGGTCCCGGGG ACAACTCGGTTCTGCTTACGCACCCGGCGCCTTCTTCACCTTTGAGGGCGGTCTTGGCGCTTGCATTTCCTTGCCGGACT TCTCGTCAATGGTCGACGACGCTCCGATTCACTCGACCACGAAGGCACAAATCATTTTGCGACTTCAGGAGGTCTGGCAG AGTTGGTTTGCGCGGTCTTACGCGGTGGGCATCGGAAACCAGCAAATCGACCCCCGCCAGTGCCTGGATGAGGCGCTTCT CGGAGGTGCCACCGTCGTGCCTCTGGGTGCAGACCGGCTCGCGTTCCTGAGTCCGCTACGCATGGGATATGCTCCGGCGC CGCTGACTTTCGTGTGCAATAAGTGCCGACTCTTCAGGCGCTTCGAATCAGCGCACGACCTGGCGCAAAATATCATCCGT CTACGCAAAACCCAGTGCGGTGCGGCTGATGGGAAAGGGCTGTGCCAGTGGCGCCAACTGGACGTCATTTTCGTGCACTG GTCGGGCGAGTGGATGCCAGCGACTCCCGGTCGATGGGAGTGGGATGACCGCAAGAACGACCTGAGGCTTTCCGGCGAAG AGTGCAGCGTATGTGGCAAGAGGGACTTCAAGCTGAATACGGACTCGCCGCGCATCGGTCAGTGGCACTTCTACTGTGCC AATCCAACCTGTGGGCATAAAGGTTCTGATGAGTGGCGCCAGAACGACCAGTTTACGACGGAGGTGTTCAGGGACACGGC TAATAGGCGCGTGAGCGAGCGTCGTATGGAACCTATCTCATACCGAGCCTCTTCGGCCTACTATGCACAATCCGAGCAGT TCGTCCTGTTTTCGCAGTCCGAGCACCATTTGCTGGAGATGCTCGAGCCGCAACGACAGTCGGAACTTGCCGCATTTATC GGCAAGCGGTTTCGGTTTGAGGGCGGTGAACTAACCTCTGACGAGATGAAAGCAGCGCTGCTGGCGGGTGGGAAAGCTGG CGAGTGGGAGACGTACGAGAACCTTTCGCGCATCTGTGAGCTAGCCCGGGGAATGGACGACAAGGGCCCACAGGAGATGG CTGAAAAGGAACTCAAGAAACTCATCGACCGATGGACTACAAGCGACCCGCCGCTCGTACCACCGCGTGTTGTCCTGCCG CCAGGAATCCACGCACAGCTGACCGCTCGCAGTGAGTACACAAGCCGCTTCGACCCTTTCGTTCTGACGGTAGAGCACGA GGCACTCAACCGGGGCAAGCTCTCCGCTGCGCCCGACGGTGGTCGGGCTAAGTTCGTGCGCTTTAACCATCTCGACAACG ACCTCGCCCCCAAAGACGCCAGTGTTAAGGCAGCCCAAGAAGCTCAGACGCAGCATTTGATGACAAAGCTCGGCATGGCC GACTTGGGCCTGATTCGCGAGTTTGACCTGTGTCGCTTCACGCACGGCTACACGCGAGTTAGCGCGACGCCGACCTTGGA GAAGCGGAACCAATTGATGCCTGTACGCTTGCGCCTGTTCGACCCGCTGCGTAACGGCAAACGACCCATCTACGTCGTAA CGCAAGCCAACGAAGCGTTATATGTGCGCCTCGACCCTCGCGCGGTTTATAGGTGGTTGCAGTCCGTCGGCGTCGTTGAC CTGCCAGATTGGGACGAGAGCGGCATTGTTAAACTTGGCGGAAAGATTCTGGAGGTCGCGCAGCCTTTTGGGCGGTACTT CTCTTTGCTCAAGGAGGGCGATGCCGCAACCTATCGCTACGTCTACACGTTGCTCCATACCTACGCTCACTCCATCATGA AGAGCGTGGCTGAGCTTTCTGGTCTGGACTTGGGCTCGATGGGAGAGTATCTCTTTCCGTTGGACTTGGCGTTCGTCGTT TACCGAAACGGTACGACTATGGACCTGGGCAACCTTTCGTCGCTGTGGCGTAACGAGAACAACCGGTTCCTGTCTCGCTT GCTCGAGCCGTCCACGCATCGCTGCAATTCGGGCCGCCTCTGTGACACGGCCGGCGGGGCCTGCCCTGACTGCATCATGA TTCCCGAGACATCATGCCTTGCACAGAATCAGTTGCTGTCTCGCGCGGTTCTCAAAGGCGGCCCACCGCCGCGCGAGGAC ACCACACACAGGGGCAAGCGAATCCCCGGTTTTCTTGAGGTGGTTAACGAAGGGATTGCGGACTGA
Upstream 100 bases:
>100_bases AAGACCCAGACGCCCGGCGAGGTTCTGCTGGTGATGGACCTAGTCCGTCACGGCGTGGCTAACAACGACGGTGCGGATAA CGCACAAACGGGGGACTGAG
Downstream 100 bases:
>100_bases ACGGCTGAACGCGTTCGACATGTTGACCTCTCACTCTGAGGTGACCGCTGCTCTATGCGTGGAGGCCGCTCGACGGTCGC GGGACCTACCCGCGACCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 741; Mature: 740
Protein sequence:
>741_residues MATRKGFLDAEGEEKTLSAPTMARSRGQLGSAYAPGAFFTFEGGLGACISLPDFSSMVDDAPIHSTTKAQIILRLQEVWQ SWFARSYAVGIGNQQIDPRQCLDEALLGGATVVPLGADRLAFLSPLRMGYAPAPLTFVCNKCRLFRRFESAHDLAQNIIR LRKTQCGAADGKGLCQWRQLDVIFVHWSGEWMPATPGRWEWDDRKNDLRLSGEECSVCGKRDFKLNTDSPRIGQWHFYCA NPTCGHKGSDEWRQNDQFTTEVFRDTANRRVSERRMEPISYRASSAYYAQSEQFVLFSQSEHHLLEMLEPQRQSELAAFI GKRFRFEGGELTSDEMKAALLAGGKAGEWETYENLSRICELARGMDDKGPQEMAEKELKKLIDRWTTSDPPLVPPRVVLP PGIHAQLTARSEYTSRFDPFVLTVEHEALNRGKLSAAPDGGRAKFVRFNHLDNDLAPKDASVKAAQEAQTQHLMTKLGMA DLGLIREFDLCRFTHGYTRVSATPTLEKRNQLMPVRLRLFDPLRNGKRPIYVVTQANEALYVRLDPRAVYRWLQSVGVVD LPDWDESGIVKLGGKILEVAQPFGRYFSLLKEGDAATYRYVYTLLHTYAHSIMKSVAELSGLDLGSMGEYLFPLDLAFVV YRNGTTMDLGNLSSLWRNENNRFLSRLLEPSTHRCNSGRLCDTAGGACPDCIMIPETSCLAQNQLLSRAVLKGGPPPRED TTHRGKRIPGFLEVVNEGIAD
Sequences:
>Translated_741_residues MATRKGFLDAEGEEKTLSAPTMARSRGQLGSAYAPGAFFTFEGGLGACISLPDFSSMVDDAPIHSTTKAQIILRLQEVWQ SWFARSYAVGIGNQQIDPRQCLDEALLGGATVVPLGADRLAFLSPLRMGYAPAPLTFVCNKCRLFRRFESAHDLAQNIIR LRKTQCGAADGKGLCQWRQLDVIFVHWSGEWMPATPGRWEWDDRKNDLRLSGEECSVCGKRDFKLNTDSPRIGQWHFYCA NPTCGHKGSDEWRQNDQFTTEVFRDTANRRVSERRMEPISYRASSAYYAQSEQFVLFSQSEHHLLEMLEPQRQSELAAFI GKRFRFEGGELTSDEMKAALLAGGKAGEWETYENLSRICELARGMDDKGPQEMAEKELKKLIDRWTTSDPPLVPPRVVLP PGIHAQLTARSEYTSRFDPFVLTVEHEALNRGKLSAAPDGGRAKFVRFNHLDNDLAPKDASVKAAQEAQTQHLMTKLGMA DLGLIREFDLCRFTHGYTRVSATPTLEKRNQLMPVRLRLFDPLRNGKRPIYVVTQANEALYVRLDPRAVYRWLQSVGVVD LPDWDESGIVKLGGKILEVAQPFGRYFSLLKEGDAATYRYVYTLLHTYAHSIMKSVAELSGLDLGSMGEYLFPLDLAFVV YRNGTTMDLGNLSSLWRNENNRFLSRLLEPSTHRCNSGRLCDTAGGACPDCIMIPETSCLAQNQLLSRAVLKGGPPPRED TTHRGKRIPGFLEVVNEGIAD >Mature_740_residues ATRKGFLDAEGEEKTLSAPTMARSRGQLGSAYAPGAFFTFEGGLGACISLPDFSSMVDDAPIHSTTKAQIILRLQEVWQS WFARSYAVGIGNQQIDPRQCLDEALLGGATVVPLGADRLAFLSPLRMGYAPAPLTFVCNKCRLFRRFESAHDLAQNIIRL RKTQCGAADGKGLCQWRQLDVIFVHWSGEWMPATPGRWEWDDRKNDLRLSGEECSVCGKRDFKLNTDSPRIGQWHFYCAN PTCGHKGSDEWRQNDQFTTEVFRDTANRRVSERRMEPISYRASSAYYAQSEQFVLFSQSEHHLLEMLEPQRQSELAAFIG KRFRFEGGELTSDEMKAALLAGGKAGEWETYENLSRICELARGMDDKGPQEMAEKELKKLIDRWTTSDPPLVPPRVVLPP GIHAQLTARSEYTSRFDPFVLTVEHEALNRGKLSAAPDGGRAKFVRFNHLDNDLAPKDASVKAAQEAQTQHLMTKLGMAD LGLIREFDLCRFTHGYTRVSATPTLEKRNQLMPVRLRLFDPLRNGKRPIYVVTQANEALYVRLDPRAVYRWLQSVGVVDL PDWDESGIVKLGGKILEVAQPFGRYFSLLKEGDAATYRYVYTLLHTYAHSIMKSVAELSGLDLGSMGEYLFPLDLAFVVY RNGTTMDLGNLSSLWRNENNRFLSRLLEPSTHRCNSGRLCDTAGGACPDCIMIPETSCLAQNQLLSRAVLKGGPPPREDT THRGKRIPGFLEVVNEGIAD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83138; Mature: 83007
Theoretical pI: Translated: 7.47; Mature: 7.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATRKGFLDAEGEEKTLSAPTMARSRGQLGSAYAPGAFFTFEGGLGACISLPDFSSMVDD CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHCC APIHSTTKAQIILRLQEVWQSWFARSYAVGIGNQQIDPRQCLDEALLGGATVVPLGADRL CCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHCCCEEEECCCHHH AFLSPLRMGYAPAPLTFVCNKCRLFRRFESAHDLAQNIIRLRKTQCGAADGKGLCQWRQL HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE DVIFVHWSGEWMPATPGRWEWDDRKNDLRLSGEECSVCGKRDFKLNTDSPRIGQWHFYCA EEEEEEECCCEECCCCCCCCCCCCCCCEEECCCHHCCCCCCCCEECCCCCCCCCEEEEEC NPTCGHKGSDEWRQNDQFTTEVFRDTANRRVSERRMEPISYRASSAYYAQSEQFVLFSQS CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEECCCEEEEEECC EHHLLEMLEPQRQSELAAFIGKRFRFEGGELTSDEMKAALLAGGKAGEWETYENLSRICE HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH LARGMDDKGPQEMAEKELKKLIDRWTTSDPPLVPPRVVLPPGIHAQLTARSEYTSRFDPF HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEECHHHHCCCCCE VLTVEHEALNRGKLSAAPDGGRAKFVRFNHLDNDLAPKDASVKAAQEAQTQHLMTKLGMA EEEEEHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCHH DLGLIREFDLCRFTHGYTRVSATPTLEKRNQLMPVRLRLFDPLRNGKRPIYVVTQANEAL HHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCEEHHEEHHHHHCCCCCEEEEEECCCEE YVRLDPRAVYRWLQSVGVVDLPDWDESGIVKLGGKILEVAQPFGRYFSLLKEGDAATYRY EEEECHHHHHHHHHHCCCEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHH VYTLLHTYAHSIMKSVAELSGLDLGSMGEYLFPLDLAFVVYRNGTTMDLGNLSSLWRNEN HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCEEEEEEEECCCEECCCCHHHHHHCCC NRFLSRLLEPSTHRCNSGRLCDTAGGACPDCIMIPETSCLAQNQLLSRAVLKGGPPPRED HHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCC TTHRGKRIPGFLEVVNEGIAD CCCCCCCCCHHHHHHHHHCCC >Mature Secondary Structure ATRKGFLDAEGEEKTLSAPTMARSRGQLGSAYAPGAFFTFEGGLGACISLPDFSSMVDD CCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHCC APIHSTTKAQIILRLQEVWQSWFARSYAVGIGNQQIDPRQCLDEALLGGATVVPLGADRL CCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHCCCEEEECCCHHH AFLSPLRMGYAPAPLTFVCNKCRLFRRFESAHDLAQNIIRLRKTQCGAADGKGLCQWRQL HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE DVIFVHWSGEWMPATPGRWEWDDRKNDLRLSGEECSVCGKRDFKLNTDSPRIGQWHFYCA EEEEEEECCCEECCCCCCCCCCCCCCCEEECCCHHCCCCCCCCEECCCCCCCCCEEEEEC NPTCGHKGSDEWRQNDQFTTEVFRDTANRRVSERRMEPISYRASSAYYAQSEQFVLFSQS CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEECCCEEEEEECC EHHLLEMLEPQRQSELAAFIGKRFRFEGGELTSDEMKAALLAGGKAGEWETYENLSRICE HHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH LARGMDDKGPQEMAEKELKKLIDRWTTSDPPLVPPRVVLPPGIHAQLTARSEYTSRFDPF HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEECHHHHCCCCCE VLTVEHEALNRGKLSAAPDGGRAKFVRFNHLDNDLAPKDASVKAAQEAQTQHLMTKLGMA EEEEEHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCHH DLGLIREFDLCRFTHGYTRVSATPTLEKRNQLMPVRLRLFDPLRNGKRPIYVVTQANEAL HHHHHHHHHHHHHCCCCEEEECCCCHHHHCCCCEEHHEEHHHHHCCCCCEEEEEECCCEE YVRLDPRAVYRWLQSVGVVDLPDWDESGIVKLGGKILEVAQPFGRYFSLLKEGDAATYRY EEEECHHHHHHHHHHCCCEECCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHH VYTLLHTYAHSIMKSVAELSGLDLGSMGEYLFPLDLAFVVYRNGTTMDLGNLSSLWRNEN HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCEEEEEEEECCCEECCCCHHHHHHCCC NRFLSRLLEPSTHRCNSGRLCDTAGGACPDCIMIPETSCLAQNQLLSRAVLKGGPPPRED HHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCC TTHRGKRIPGFLEVVNEGIAD CCCCCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA