Click here to switch to the map view.

The map label for this gene is 116688233

Identifier: 116688233

GI number: 116688233

Start: 232517

End: 233656

Strand: Reverse

Name: 116688233

Synonym: Bcen2424_0209

Alternate gene names: NA

Gene position: 233656-232517 (Counterclockwise)

Preceding gene: 116688234

Following gene: 116688229

Centisome position: 6.71

GC content: 58.77

Gene sequence:

>1140_bases
ATGGCTGCTTCCATCACCAGCAAGACCGCTCGCGACAAACTGCCCCCGCGCCGCGAACCCTACTTCGCCCGCGTCCAATC
CGGTCTTTACGTCGGCTTCCGCAAGCTCGCCGAAGGCGATGGCACATGGATTGCCCGCAGACGTAACGAAGCAGGCAAGC
AGGAATATAAGGCGCTTGGTACGCTCCCGGCCTTCGACGATGCAGTGAAAGCCACGCTCGAATGGTCTAAGGCCGTGGAC
GCCGGCGTGTCCACCAAGGCCACGACCGTCACGAACGCCTGCGAACAGTACGTCAAGCATCTGGGGCTACATAAAGGCTC
CTCCAGCAAATTGGATGCCGAAGGCCGTTTCAAGCGACTGGTCTACGACGACAAGATCGGTCGTATCGATCTGTCAAAGC
TGCGGACGTCGCACGTTAAGGACTGGCTGGCCGAGCAGATCAGCGAGATCGAGGAGTCCGCGGAGGACGAAGACGATCTC
CGGCGCGCCAAGGACTCGGCGAACCGGAACCTTGCGTCGTTGAAAGCTGCCCTGAACCTAGCGCTGCATGATCGCCTCGT
CGCGACCGATGCTGGATGGAAAACAGTTACAAAGTTCAAGGATGTCGGGCGTCGCAGACAATCGTTTCTTCCGGCAGAAC
AGCGAAGCGCACTGATAGATGCCTGTGCCGAAGACATCCGGCAACTGGTCAAAGCCATGCTGTTCACCGCGGCTCGCCCA
GGCGAACTTGCACGCGCCTGCGTCAAACATTTCGATCGGCAGCAAGGCACACTCGTCCTCGACGGGAAGACTGGGCACCG
TGTCGTCTCGCTGGCGTCGGCGGCGATCCGCTTCTTCGACGAGCAGACCAAAGGCAAGATCGCCAACGCACCCATATTTT
CCACCGAGTACGGCCAGTCCTGGAACAAGGACTCGTGGAAGAAACCGTTCAAGGATGCGGTCAAAACGGCCAAGCTTCCT
GATTCCGTTGTGATGTACTCGCTTCGCCACACGGCCATCAGCGAAATGATCGCAAGTGGCATCGACAGCTTCGAGGTGGC
CCGGATGGCCGGAACGTCGACCGAAATGATCGACAAGCATTACGGGCATTTGAGGCATGACCGTATGCGAGCGAAGCTCG
ATGCAATCGCTATCATCTAG

Upstream 100 bases:

>100_bases
CAAGGAACAGAATCAACACACTGATTTTATTGAAAAATACATCCATTGCCATCCAACCCTATCCAGCCTAGAATTTCCGT
ACAATTTCCGTACGAAAATT

Downstream 100 bases:

>100_bases
GATAAAAGGGCCCGCACATCGATGACGAGCGTACCCGCGTCGGCAGGCAAAGCCACTGATCGGCGCATCTGGCTCTTTAA
TTATCCCCTCGCATAGTGGC

Product: phage integrase family protein

Products: NA

Alternate protein names: Phage Integrase; Integrase Family Protein; Phage Integrase Family Protein; Integrase/Recombinase; Phage-Related Integrase Protein

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MAASITSKTARDKLPPRREPYFARVQSGLYVGFRKLAEGDGTWIARRRNEAGKQEYKALGTLPAFDDAVKATLEWSKAVD
AGVSTKATTVTNACEQYVKHLGLHKGSSSKLDAEGRFKRLVYDDKIGRIDLSKLRTSHVKDWLAEQISEIEESAEDEDDL
RRAKDSANRNLASLKAALNLALHDRLVATDAGWKTVTKFKDVGRRRQSFLPAEQRSALIDACAEDIRQLVKAMLFTAARP
GELARACVKHFDRQQGTLVLDGKTGHRVVSLASAAIRFFDEQTKGKIANAPIFSTEYGQSWNKDSWKKPFKDAVKTAKLP
DSVVMYSLRHTAISEMIASGIDSFEVARMAGTSTEMIDKHYGHLRHDRMRAKLDAIAII

Sequences:

>Translated_379_residues
MAASITSKTARDKLPPRREPYFARVQSGLYVGFRKLAEGDGTWIARRRNEAGKQEYKALGTLPAFDDAVKATLEWSKAVD
AGVSTKATTVTNACEQYVKHLGLHKGSSSKLDAEGRFKRLVYDDKIGRIDLSKLRTSHVKDWLAEQISEIEESAEDEDDL
RRAKDSANRNLASLKAALNLALHDRLVATDAGWKTVTKFKDVGRRRQSFLPAEQRSALIDACAEDIRQLVKAMLFTAARP
GELARACVKHFDRQQGTLVLDGKTGHRVVSLASAAIRFFDEQTKGKIANAPIFSTEYGQSWNKDSWKKPFKDAVKTAKLP
DSVVMYSLRHTAISEMIASGIDSFEVARMAGTSTEMIDKHYGHLRHDRMRAKLDAIAII
>Mature_378_residues
AASITSKTARDKLPPRREPYFARVQSGLYVGFRKLAEGDGTWIARRRNEAGKQEYKALGTLPAFDDAVKATLEWSKAVDA
GVSTKATTVTNACEQYVKHLGLHKGSSSKLDAEGRFKRLVYDDKIGRIDLSKLRTSHVKDWLAEQISEIEESAEDEDDLR
RAKDSANRNLASLKAALNLALHDRLVATDAGWKTVTKFKDVGRRRQSFLPAEQRSALIDACAEDIRQLVKAMLFTAARPG
ELARACVKHFDRQQGTLVLDGKTGHRVVSLASAAIRFFDEQTKGKIANAPIFSTEYGQSWNKDSWKKPFKDAVKTAKLPD
SVVMYSLRHTAISEMIASGIDSFEVARMAGTSTEMIDKHYGHLRHDRMRAKLDAIAII

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42209; Mature: 42078

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASITSKTARDKLPPRREPYFARVQSGLYVGFRKLAEGDGTWIARRRNEAGKQEYKALG
CCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHC
TLPAFDDAVKATLEWSKAVDAGVSTKATTVTNACEQYVKHLGLHKGSSSKLDAEGRFKRL
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
VYDDKIGRIDLSKLRTSHVKDWLAEQISEIEESAEDEDDLRRAKDSANRNLASLKAALNL
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHH
ALHDRLVATDAGWKTVTKFKDVGRRRQSFLPAEQRSALIDACAEDIRQLVKAMLFTAARP
HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GELARACVKHFDRQQGTLVLDGKTGHRVVSLASAAIRFFDEQTKGKIANAPIFSTEYGQS
HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCC
WNKDSWKKPFKDAVKTAKLPDSVVMYSLRHTAISEMIASGIDSFEVARMAGTSTEMIDKH
CCCCHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHH
YGHLRHDRMRAKLDAIAII
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AASITSKTARDKLPPRREPYFARVQSGLYVGFRKLAEGDGTWIARRRNEAGKQEYKALG
CCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHC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HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA