| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688218
Identifier: 116688218
GI number: 116688218
Start: 217031
End: 217984
Strand: Reverse
Name: 116688218
Synonym: Bcen2424_0194
Alternate gene names: NA
Gene position: 217984-217031 (Counterclockwise)
Preceding gene: 116688220
Following gene: 116688217
Centisome position: 6.26
GC content: 57.34
Gene sequence:
>954_bases ATGGCGAGCGAGCTTTTCAGCGAGTTCTTTTGGAGCAAGCTTGGGCCGGTGAACCATGACTGGCCGTGTGAAGATCAGGA AAGGCACAAGGTCAAAGAACACCCGTGCGACGTTGTGTACTACTACGACGAGCCGTATGCGGCTCGACAGACATACGTGC ACTGCGACCTCAAGAGCTACGCCAAAGGCACGATCACTGCTGCCGCTGTTAAAAGCGCGATCGAAAGCCTGGCCAAGCAG GTGGCATGCGCCGAGAAAAGTGAGACCTGGCGGAACCTGCATACGCACGACAACGTGACGTTCTCCGTTAACGGACTGCT GTTCGTGTACAACCATGACGGCGAATATGAGGCCGACTTCCAGAGGAATTTGGTTCATGTTGCGCCGGAGACTCTGCACC TGCCGCGCGGGAGTCGGCTCTTCGTTCTTGGCCCAAAAGAAATATTCTGGCTGGACAACATCCGTGACGAGATCCAGCGG CTACGTGGACGACGCATCCCGGAGGTTCCGGCACCCGAACACTGCTTCTACTTTCACCCGCAGTTGGTGAGGAGGGCGAA TCTCCAGGTTCGGAAGGCCAAGGCGGCGACACTCGAGATGCTTACATCGCCCATCATTATCCTCGAGCACCACGATCCCA AGGGAAGCGCGCGACGCGGCGTCATAGTCTTCTACTCGCGACCAGGAGACACGACAGATGAGTTCATGTACCTAATAGAC ACGCTGCGCAAGTACGAGTTGCTCGACGACCAGACCAGCGTGACGGTGAAGACGCTAGGAGCATCTCCGATCTCGTCCCC AACATTCCAGAAGGCGCAGTTGCAGTACATCGAGGGGCTTGTCGGCACCAACGTTGCGACCGACCTGGGGGACTACGTCA ACGCGATCCGCTACGAGCCGATGTCACACATCAAGACCACGTACTCTAACGTCGACCTGGGGACCTGGGGATGA
Upstream 100 bases:
>100_bases GCACTTGAATCGCGTATCCTGTCGCGAACAAGCGAGAACAGCAGTCCGGGGAGGGCGAGAATTGGCAGAAACTGGAAACA CCGCGGAACAGGCGGAACTC
Downstream 100 bases:
>100_bases GCGAATTTCTTGATCATCTGAGCGCAAACGACAACGACATCTACGACCTTCTCGTTTCGGGCAAGCAGCGGCTGACGGAG TCGGTCTTGCGCGAGTTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MASELFSEFFWSKLGPVNHDWPCEDQERHKVKEHPCDVVYYYDEPYAARQTYVHCDLKSYAKGTITAAAVKSAIESLAKQ VACAEKSETWRNLHTHDNVTFSVNGLLFVYNHDGEYEADFQRNLVHVAPETLHLPRGSRLFVLGPKEIFWLDNIRDEIQR LRGRRIPEVPAPEHCFYFHPQLVRRANLQVRKAKAATLEMLTSPIIILEHHDPKGSARRGVIVFYSRPGDTTDEFMYLID TLRKYELLDDQTSVTVKTLGASPISSPTFQKAQLQYIEGLVGTNVATDLGDYVNAIRYEPMSHIKTTYSNVDLGTWG
Sequences:
>Translated_317_residues MASELFSEFFWSKLGPVNHDWPCEDQERHKVKEHPCDVVYYYDEPYAARQTYVHCDLKSYAKGTITAAAVKSAIESLAKQ VACAEKSETWRNLHTHDNVTFSVNGLLFVYNHDGEYEADFQRNLVHVAPETLHLPRGSRLFVLGPKEIFWLDNIRDEIQR LRGRRIPEVPAPEHCFYFHPQLVRRANLQVRKAKAATLEMLTSPIIILEHHDPKGSARRGVIVFYSRPGDTTDEFMYLID TLRKYELLDDQTSVTVKTLGASPISSPTFQKAQLQYIEGLVGTNVATDLGDYVNAIRYEPMSHIKTTYSNVDLGTWG >Mature_316_residues ASELFSEFFWSKLGPVNHDWPCEDQERHKVKEHPCDVVYYYDEPYAARQTYVHCDLKSYAKGTITAAAVKSAIESLAKQV ACAEKSETWRNLHTHDNVTFSVNGLLFVYNHDGEYEADFQRNLVHVAPETLHLPRGSRLFVLGPKEIFWLDNIRDEIQRL RGRRIPEVPAPEHCFYFHPQLVRRANLQVRKAKAATLEMLTSPIIILEHHDPKGSARRGVIVFYSRPGDTTDEFMYLIDT LRKYELLDDQTSVTVKTLGASPISSPTFQKAQLQYIEGLVGTNVATDLGDYVNAIRYEPMSHIKTTYSNVDLGTWG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36278; Mature: 36147
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASELFSEFFWSKLGPVNHDWPCEDQERHKVKEHPCDVVYYYDEPYAARQTYVHCDLKSY CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCEEEEEECHHHH AKGTITAAAVKSAIESLAKQVACAEKSETWRNLHTHDNVTFSVNGLLFVYNHDGEYEADF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCCCCCHH QRNLVHVAPETLHLPRGSRLFVLGPKEIFWLDNIRDEIQRLRGRRIPEVPAPEHCFYFHP HCCEEEECCCCEECCCCCEEEEECCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCEEEECH QLVRRANLQVRKAKAATLEMLTSPIIILEHHDPKGSARRGVIVFYSRPGDTTDEFMYLID HHHHHCCCCEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHH TLRKYELLDDQTSVTVKTLGASPISSPTFQKAQLQYIEGLVGTNVATDLGDYVNAIRYEP HHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC MSHIKTTYSNVDLGTWG HHHHHHHHCCCCCCCCC >Mature Secondary Structure ASELFSEFFWSKLGPVNHDWPCEDQERHKVKEHPCDVVYYYDEPYAARQTYVHCDLKSY HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCEEEEEECHHHH AKGTITAAAVKSAIESLAKQVACAEKSETWRNLHTHDNVTFSVNGLLFVYNHDGEYEADF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCCCCCHH QRNLVHVAPETLHLPRGSRLFVLGPKEIFWLDNIRDEIQRLRGRRIPEVPAPEHCFYFHP HCCEEEECCCCEECCCCCEEEEECCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCEEEECH QLVRRANLQVRKAKAATLEMLTSPIIILEHHDPKGSARRGVIVFYSRPGDTTDEFMYLID HHHHHCCCCEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHH TLRKYELLDDQTSVTVKTLGASPISSPTFQKAQLQYIEGLVGTNVATDLGDYVNAIRYEP HHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC MSHIKTTYSNVDLGTWG HHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA