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The map label for this gene is ybiR [H]

Identifier: 116688121

GI number: 116688121

Start: 100858

End: 101988

Strand: Direct

Name: ybiR [H]

Synonym: Bcen2424_0097

Alternate gene names: 116688121

Gene position: 100858-101988 (Clockwise)

Preceding gene: 116688120

Following gene: 116688122

Centisome position: 2.89

GC content: 67.46

Gene sequence:

>1131_bases
ATGGAGGAAACGGGGGCACCGGCACCGCGCCGGTGGCTCGGCTGGCTTGCGCAGGAACCGGTGCTGTCGGTGCTCGCGCT
TGGGCTGATCGTGCTGCAATGGGTGCGTCCGCAACCATTTTCGGTACTGGCCGATCGCGTCGACTGGCAGACGGTCGCGA
CGCTTGGGGGCCTGCTGATGCTGACCAAGGCGCTCGAGCTGTCCGGCTGCCTGATGTGGCTCGCGCATCGCATCGTGCAT
CACGTGCATTCCGAACGCGGGCTCGCGATGCTGCTCGTCGGCTTCGCCGCCGTGCTGTCGATGTGGCTCACCAACGACGT
CGCCTTGTTCGTCGTCGTGCCGTTGATGGTGTCGCTGCGCGCGCTGACACCGCTGCCGTTCCGGCGGCTCGTGATCGTCG
TCGCGCTGGCCGTCAACGCGGGGTCCGTCGCGACACCGCTCGGCAACCCGCAGAATCTTTTCCTGTGGCAGTTGAGCGGC
GTGTCGTTCGGTCGTTTCGTGGTCACGCTCGGGCCGCTCGCCCTCGCGCTGATGGCGCTGCTGCTCGTGCTGACCGCGTT
GATGTTTCGCGCGAAGCCGCTCGACTTGTCGGGCGACGCCGCCGCGTTGCCCGTACAACGCATGCACGCGCTGATCGCGG
CCGTGCTGTTCGCCGCGTTCGTGCTGCTAGCCGATGCGCATCATCCGCTGCCGGGCCTCGTCGGTGTCGCCATCGTGCTG
TTCGCCGTCAAACGTGACGCAGTCCTGAAGATCGACTGGCTGCTGCTGCTGATCTTCGTGCTGATGTTCGTCGTGCTGCG
CAGCGCGGCTGCGCTGCCCGTCGTGCACGACGCGATCGCGCACGCGCAACTCGATTCGCCGCTGCGCGTCTATGCCGCCG
GCGCCGTGCTGTCACAGGTGATCAGCAACGTGCCGGCCGCAATCCTGCTGTCGGAGTTCACGCACGACTGGCGCGCGCTT
GCGTTCGGCGTATCGGTCGGCGGCTTCGGCTTCGCGATCGGCTCGCTCGCGAACCTGATCGCGGTGCGCCTCGCGAAGGA
GCCGCGCATGTGGCTGCCGTTCCACCTCGTTTCGATTCCGTTCGCGCTGGCGAGCGCGGCGCTCGGTGCGTGGTTGCTCA
TGCACGGTTGA

Upstream 100 bases:

>100_bases
CGAGGGCAGGTGCTGATCGACTTCGGCAACCTCGATGCGCTCGAAGGCATTCTCGCGCGGCTGCGCGGCAACGTCGCAAC
AGAAGAATAACGGGGCAGGT

Downstream 100 bases:

>100_bases
GCGAGCCGGTGCGTGCGGCACAGGCATGCCGCTCGGGTGACGGGCAGGGCGCACAGCGTGCGCAGTGATCGGGGATTGTT
GATAAGTGCCGCAACTCACA

Product: citrate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MEETGAPAPRRWLGWLAQEPVLSVLALGLIVLQWVRPQPFSVLADRVDWQTVATLGGLLMLTKALELSGCLMWLAHRIVH
HVHSERGLAMLLVGFAAVLSMWLTNDVALFVVVPLMVSLRALTPLPFRRLVIVVALAVNAGSVATPLGNPQNLFLWQLSG
VSFGRFVVTLGPLALALMALLLVLTALMFRAKPLDLSGDAAALPVQRMHALIAAVLFAAFVLLADAHHPLPGLVGVAIVL
FAVKRDAVLKIDWLLLLIFVLMFVVLRSAAALPVVHDAIAHAQLDSPLRVYAAGAVLSQVISNVPAAILLSEFTHDWRAL
AFGVSVGGFGFAIGSLANLIAVRLAKEPRMWLPFHLVSIPFALASAALGAWLLMHG

Sequences:

>Translated_376_residues
MEETGAPAPRRWLGWLAQEPVLSVLALGLIVLQWVRPQPFSVLADRVDWQTVATLGGLLMLTKALELSGCLMWLAHRIVH
HVHSERGLAMLLVGFAAVLSMWLTNDVALFVVVPLMVSLRALTPLPFRRLVIVVALAVNAGSVATPLGNPQNLFLWQLSG
VSFGRFVVTLGPLALALMALLLVLTALMFRAKPLDLSGDAAALPVQRMHALIAAVLFAAFVLLADAHHPLPGLVGVAIVL
FAVKRDAVLKIDWLLLLIFVLMFVVLRSAAALPVVHDAIAHAQLDSPLRVYAAGAVLSQVISNVPAAILLSEFTHDWRAL
AFGVSVGGFGFAIGSLANLIAVRLAKEPRMWLPFHLVSIPFALASAALGAWLLMHG
>Mature_376_residues
MEETGAPAPRRWLGWLAQEPVLSVLALGLIVLQWVRPQPFSVLADRVDWQTVATLGGLLMLTKALELSGCLMWLAHRIVH
HVHSERGLAMLLVGFAAVLSMWLTNDVALFVVVPLMVSLRALTPLPFRRLVIVVALAVNAGSVATPLGNPQNLFLWQLSG
VSFGRFVVTLGPLALALMALLLVLTALMFRAKPLDLSGDAAALPVQRMHALIAAVLFAAFVLLADAHHPLPGLVGVAIVL
FAVKRDAVLKIDWLLLLIFVLMFVVLRSAAALPVVHDAIAHAQLDSPLRVYAAGAVLSQVISNVPAAILLSEFTHDWRAL
AFGVSVGGFGFAIGSLANLIAVRLAKEPRMWLPFHLVSIPFALASAALGAWLLMHG

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=328, Percent_Identity=42.3780487804878, Blast_Score=219, Evalue=3e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 40340; Mature: 40340

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEETGAPAPRRWLGWLAQEPVLSVLALGLIVLQWVRPQPFSVLADRVDWQTVATLGGLLM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LTKALELSGCLMWLAHRIVHHVHSERGLAMLLVGFAAVLSMWLTNDVALFVVVPLMVSLR
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ALTPLPFRRLVIVVALAVNAGSVATPLGNPQNLFLWQLSGVSFGRFVVTLGPLALALMAL
HCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
LLVLTALMFRAKPLDLSGDAAALPVQRMHALIAAVLFAAFVLLADAHHPLPGLVGVAIVL
HHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
FAVKRDAVLKIDWLLLLIFVLMFVVLRSAAALPVVHDAIAHAQLDSPLRVYAAGAVLSQV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ISNVPAAILLSEFTHDWRALAFGVSVGGFGFAIGSLANLIAVRLAKEPRMWLPFHLVSIP
HHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
FALASAALGAWLLMHG
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEETGAPAPRRWLGWLAQEPVLSVLALGLIVLQWVRPQPFSVLADRVDWQTVATLGGLLM
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LTKALELSGCLMWLAHRIVHHVHSERGLAMLLVGFAAVLSMWLTNDVALFVVVPLMVSLR
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ALTPLPFRRLVIVVALAVNAGSVATPLGNPQNLFLWQLSGVSFGRFVVTLGPLALALMAL
HCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
LLVLTALMFRAKPLDLSGDAAALPVQRMHALIAAVLFAAFVLLADAHHPLPGLVGVAIVL
HHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
FAVKRDAVLKIDWLLLLIFVLMFVVLRSAAALPVVHDAIAHAQLDSPLRVYAAGAVLSQV
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ISNVPAAILLSEFTHDWRALAFGVSVGGFGFAIGSLANLIAVRLAKEPRMWLPFHLVSIP
HHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
FALASAALGAWLLMHG
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]