| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688094
Identifier: 116688094
GI number: 116688094
Start: 72682
End: 73320
Strand: Direct
Name: 116688094
Synonym: Bcen2424_0070
Alternate gene names: NA
Gene position: 72682-73320 (Clockwise)
Preceding gene: 116688093
Following gene: 116688095
Centisome position: 2.09
GC content: 67.29
Gene sequence:
>639_bases ATGAGCGAAGGCGTTTACGGGAACCAGGCTGCGGGACGTGTGACCCACAGCCTGCTGCGGTTGAGCACGGCCATGCGGAG CGAGGCATGGGATTGGGCGGAAGGCGCTGGCCTCACGCCGACGCAGGGCGAGATTCTCGTGCTGCTGCTGCAGCGCAAGG GCCCGATGCGGCTCGGCGAGATCGCGCGCGAGACGCAGCTCACCGCGGCCACCACGAGCGATGCGGTCAGCACGCTCGAG ACGAAGGGGCTCGTCGAGAAGCGCCGTGCGCTGGACGACGGCCGGGCACTGGCCGTACGCTTGTCGGCGCGTGGCCGCAC GGCCGCGAAGAAGGCGCTGCAATGGCCTGAATTCCTGACGAAAGCGGTCGGCAAGCTCGGCGCGGACGAGCAGGGCACGC TGTATCGCGCGCTGCTGAAGACGCTGCGCGAGCTGCAGGTGGCCGGCGCGACGCCGCCGCAACGCATGTGTCTCACGTGC ACGCATTTCCAGCCGAGCAAGCCGTCGAAAAAGACCGTGCATCACTGCGCGGTGCTCGACATCGCGATGTCGGACAGCGA TCTGCGTCTCGACTGCTCGGTGCAGGAAGAAGCCGACGCGGCGACGCAGAAGAAGACCTGGAAGATTTTCGCAGGCTGA
Upstream 100 bases:
>100_bases CCGTGCTGACGCACTCGAGTGGGTGCGTCTGTTTTGAGATAGATTCGATCTCCACACTACGGCTGCTCGGCCATCCGGGC GGCGGCAAAGCGAAAAGACT
Downstream 100 bases:
>100_bases CGTCCGTCGATCGACCGGGAGGCCGATGATGAACGCTGAAGTCGTGGCGATCCGCCACGTGCATTTCGAGGATCTCGGGA GCTTCGAGCAGGTGCTCGGC
Product: MarR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator MarR Family; Transcriptional Regulator
Number of amino acids: Translated: 212; Mature: 211
Protein sequence:
>212_residues MSEGVYGNQAAGRVTHSLLRLSTAMRSEAWDWAEGAGLTPTQGEILVLLLQRKGPMRLGEIARETQLTAATTSDAVSTLE TKGLVEKRRALDDGRALAVRLSARGRTAAKKALQWPEFLTKAVGKLGADEQGTLYRALLKTLRELQVAGATPPQRMCLTC THFQPSKPSKKTVHHCAVLDIAMSDSDLRLDCSVQEEADAATQKKTWKIFAG
Sequences:
>Translated_212_residues MSEGVYGNQAAGRVTHSLLRLSTAMRSEAWDWAEGAGLTPTQGEILVLLLQRKGPMRLGEIARETQLTAATTSDAVSTLE TKGLVEKRRALDDGRALAVRLSARGRTAAKKALQWPEFLTKAVGKLGADEQGTLYRALLKTLRELQVAGATPPQRMCLTC THFQPSKPSKKTVHHCAVLDIAMSDSDLRLDCSVQEEADAATQKKTWKIFAG >Mature_211_residues SEGVYGNQAAGRVTHSLLRLSTAMRSEAWDWAEGAGLTPTQGEILVLLLQRKGPMRLGEIARETQLTAATTSDAVSTLET KGLVEKRRALDDGRALAVRLSARGRTAAKKALQWPEFLTKAVGKLGADEQGTLYRALLKTLRELQVAGATPPQRMCLTCT HFQPSKPSKKTVHHCAVLDIAMSDSDLRLDCSVQEEADAATQKKTWKIFAG
Specific function: Unknown
COG id: COG1846
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23043; Mature: 22912
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: PS50995 HTH_MARR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEGVYGNQAAGRVTHSLLRLSTAMRSEAWDWAEGAGLTPTQGEILVLLLQRKGPMRLGE CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHH IARETQLTAATTSDAVSTLETKGLVEKRRALDDGRALAVRLSARGRTAAKKALQWPEFLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCHHHHH KAVGKLGADEQGTLYRALLKTLRELQVAGATPPQRMCLTCTHFQPSKPSKKTVHHCAVLD HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEEEECCCCCCCCHHHHHHHHEEE IAMSDSDLRLDCSVQEEADAATQKKTWKIFAG EEECCCCEEEECCCCHHHHHHHHCCCEEEECC >Mature Secondary Structure SEGVYGNQAAGRVTHSLLRLSTAMRSEAWDWAEGAGLTPTQGEILVLLLQRKGPMRLGE CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHH IARETQLTAATTSDAVSTLETKGLVEKRRALDDGRALAVRLSARGRTAAKKALQWPEFLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCHHHHH KAVGKLGADEQGTLYRALLKTLRELQVAGATPPQRMCLTCTHFQPSKPSKKTVHHCAVLD HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEEEECCCCCCCCHHHHHHHHEEE IAMSDSDLRLDCSVQEEADAATQKKTWKIFAG EEECCCCEEEECCCCHHHHHHHHCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA