| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is outE [H]
Identifier: 116688085
GI number: 116688085
Start: 60284
End: 61783
Strand: Reverse
Name: outE [H]
Synonym: Bcen2424_0061
Alternate gene names: 116688085
Gene position: 61783-60284 (Counterclockwise)
Preceding gene: 116688086
Following gene: 116688084
Centisome position: 1.77
GC content: 68.67
Gene sequence:
>1500_bases GTGAGCGACGTGCTCGCGTCCTCCGCCCACGACGGCGCGCCGGGCGAACGCCAGCCGCCGTCGCCGCTCGCCGCGCGCCT GCTGCCGTACGGCTTCGCGAAGAGCGGCCAGGTGCTGATCGCGCATCAGCTCGACGACACGCTCGAGGTATGGATCAGCG AACGCACGAGCGACGCCGCGCTCGCGGAGATCGCGCGCAACTTCGGCTCGATCGCCGTGCATCGCGTGCCGGCCGACGAG CTCGCACAGGCGATCAACCAGGCCTACGCACGCCAGGACGGCAGCGCCGCGCAGGTGGTCGGCGAGGTCGAAGGCGAAGT CGACCTGTCGCGGCTGATGCAGGACATTCCCGAAGTCGAGGATCTGCTCGAATCGGAAGACGATGCGCCGATCATCCGGA TGATCAACGCGCTGCTCACGCAAGCGGCGCGCGAACAGGCATCGGACATTCACATCGAGCCATTCGAGAATGCGTCGGTC GTGCGCTTTCGCGTCGACGGCACGCTGCGCGACGTCGTGCGCCCGAAGAAGGCGCTGCACGGCGCGCTGATCTCGCGGAT CAAGATCATGGCGCAGCTCGACATCGCGGAGAAGCGTCTGCCGCAGGACGGCCGCATCACGCTGCGCGTCGGCGGCCGGC CGGTCGACGTGCGGGTGTCGACGCTGCCGACCGGGCACGGCGAGCGCGCGGTGCTGCGTCTGCTCGAAAAGGATGCGCAG CGCCTGAACCTCGAAGCGCTCGGGATGGGCCGCGACACGCTCGTCCAGTTCGACAAGCTGATCGGCCGCCCGCACGGCAT CGTGCTCGTCACCGGCCCGACCGGTTCGGGCAAGACGACCACGCTGTACGCGTCGATGTCGCGGCTCGAAACCGCGACGA CCAACATCATGACCGTCGAGGACCCGATCGAATACGACCTGTCCGGCATTGGCCAGACGCAGGTGAACGAGCGAATCGGG ATGACCTTTGCCCGCGCGCTGCGCTCGATTCTGCGCCAGGACCCGGACGTGATCATGATCGGCGAAATCCGCGACCTCGA AACCGCGCAGATCGCGGTGCAGGCGTCGCTGACGGGCCACCTCGTGCTCGCGACGCTGCACACGAACGACGCGGCGTCCG CCGTCACGCGCCTGACCGACATGGGCGTCGAGCCGTACCTGCTCGCGTCGTCGCTGCTCGGCGTGCTCGCGCAGCGCCTG GTGCGCCAGCTCTGCCCGGTCTGCAAGGAAGAGCGGCATGAGGACGGCCGTACCGTATGGCATCCGGTCGGTTGCGCGAA GTGCGGACATTCCGGTTATGCGGGCCGGCGCGGTGTGTACGAGCTGCTGGTGATCGACGATTCGATCCGCTCGCTGATTC ACCGCAACGCGGCCGATGCTGAAATTCTCGCCGCCGGCCGCGCGGAAGGCATGCGCACGCTGCGCGACGACGCCGAGCGC TGGCTCGCGTCCGGCGCGACGTCGCTCGAGGAAGTGCTGCGCGTGACGGGAGGCGCATAG
Upstream 100 bases:
>100_bases CTGCCCAGCCATTGCCGGAAGCAACGCCCGCGCAGCCGCAAAGCGTGCCGCAGCAGGCGGTGCCGCAACAGCCGCTGACC ACCGCGCCGGGAGCCTCGCA
Downstream 100 bases:
>100_bases CGCGATGCCGGCATTCCGTTTCGAAGCAATCGATGCGGCGGGACGCGCGCAGAAAGGCGTGATCGATGCCGACAGTGCGC GCGCCGCGCGCGGCCAGCTG
Product: general secretory pathway protein E
Products: NA
Alternate protein names: Pectic enzymes secretion protein outE; Type II traffic warden ATPase [H]
Number of amino acids: Translated: 499; Mature: 498
Protein sequence:
>499_residues MSDVLASSAHDGAPGERQPPSPLAARLLPYGFAKSGQVLIAHQLDDTLEVWISERTSDAALAEIARNFGSIAVHRVPADE LAQAINQAYARQDGSAAQVVGEVEGEVDLSRLMQDIPEVEDLLESEDDAPIIRMINALLTQAAREQASDIHIEPFENASV VRFRVDGTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGHGERAVLRLLEKDAQ RLNLEALGMGRDTLVQFDKLIGRPHGIVLVTGPTGSGKTTTLYASMSRLETATTNIMTVEDPIEYDLSGIGQTQVNERIG MTFARALRSILRQDPDVIMIGEIRDLETAQIAVQASLTGHLVLATLHTNDAASAVTRLTDMGVEPYLLASSLLGVLAQRL VRQLCPVCKEERHEDGRTVWHPVGCAKCGHSGYAGRRGVYELLVIDDSIRSLIHRNAADAEILAAGRAEGMRTLRDDAER WLASGATSLEEVLRVTGGA
Sequences:
>Translated_499_residues MSDVLASSAHDGAPGERQPPSPLAARLLPYGFAKSGQVLIAHQLDDTLEVWISERTSDAALAEIARNFGSIAVHRVPADE LAQAINQAYARQDGSAAQVVGEVEGEVDLSRLMQDIPEVEDLLESEDDAPIIRMINALLTQAAREQASDIHIEPFENASV VRFRVDGTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGHGERAVLRLLEKDAQ RLNLEALGMGRDTLVQFDKLIGRPHGIVLVTGPTGSGKTTTLYASMSRLETATTNIMTVEDPIEYDLSGIGQTQVNERIG MTFARALRSILRQDPDVIMIGEIRDLETAQIAVQASLTGHLVLATLHTNDAASAVTRLTDMGVEPYLLASSLLGVLAQRL VRQLCPVCKEERHEDGRTVWHPVGCAKCGHSGYAGRRGVYELLVIDDSIRSLIHRNAADAEILAAGRAEGMRTLRDDAER WLASGATSLEEVLRVTGGA >Mature_498_residues SDVLASSAHDGAPGERQPPSPLAARLLPYGFAKSGQVLIAHQLDDTLEVWISERTSDAALAEIARNFGSIAVHRVPADEL AQAINQAYARQDGSAAQVVGEVEGEVDLSRLMQDIPEVEDLLESEDDAPIIRMINALLTQAAREQASDIHIEPFENASVV RFRVDGTLRDVVRPKKALHGALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGHGERAVLRLLEKDAQR LNLEALGMGRDTLVQFDKLIGRPHGIVLVTGPTGSGKTTTLYASMSRLETATTNIMTVEDPIEYDLSGIGQTQVNERIGM TFARALRSILRQDPDVIMIGEIRDLETAQIAVQASLTGHLVLATLHTNDAASAVTRLTDMGVEPYLLASSLLGVLAQRLV RQLCPVCKEERHEDGRTVWHPVGCAKCGHSGYAGRRGVYELLVIDDSIRSLIHRNAADAEILAAGRAEGMRTLRDDAERW LASGATSLEEVLRVTGGA
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of pectate lyases and cellulases across the outer membrane [H]
COG id: COG2804
COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP E family [H]
Homologues:
Organism=Escherichia coli, GI1789723, Length=420, Percent_Identity=54.2857142857143, Blast_Score=451, Evalue=1e-128, Organism=Escherichia coli, GI1786296, Length=439, Percent_Identity=42.8246013667426, Blast_Score=334, Evalue=9e-93, Organism=Escherichia coli, GI87082188, Length=282, Percent_Identity=36.1702127659575, Blast_Score=121, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013369 - InterPro: IPR001482 [H]
Pfam domain/function: PF00437 GSPII_E [H]
EC number: NA
Molecular weight: Translated: 54102; Mature: 53971
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS00662 T2SP_E
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVLASSAHDGAPGERQPPSPLAARLLPYGFAKSGQVLIAHQLDDTLEVWISERTSDAA CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHH LAEIARNFGSIAVHRVPADELAQAINQAYARQDGSAAQVVGEVEGEVDLSRLMQDIPEVE HHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHCHHHH DLLESEDDAPIIRMINALLTQAAREQASDIHIEPFENASVVRFRVDGTLRDVVRPKKALH HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH GALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGHGERAVLRLLEKDAQ HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHH RLNLEALGMGRDTLVQFDKLIGRPHGIVLVTGPTGSGKTTTLYASMSRLETATTNIMTVE HCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHCCEEEEC DPIEYDLSGIGQTQVNERIGMTFARALRSILRQDPDVIMIGEIRDLETAQIAVQASLTGH CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEEEEECCCE LVLATLHTNDAASAVTRLTDMGVEPYLLASSLLGVLAQRLVRQLCPVCKEERHEDGRTVW EEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE HPVGCAKCGHSGYAGRRGVYELLVIDDSIRSLIHRNAADAEILAAGRAEGMRTLRDDAER CCCCHHHCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHH WLASGATSLEEVLRVTGGA HHHCCCHHHHHHHHHCCCC >Mature Secondary Structure SDVLASSAHDGAPGERQPPSPLAARLLPYGFAKSGQVLIAHQLDDTLEVWISERTSDAA CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCCCHHH LAEIARNFGSIAVHRVPADELAQAINQAYARQDGSAAQVVGEVEGEVDLSRLMQDIPEVE HHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHCHHHH DLLESEDDAPIIRMINALLTQAAREQASDIHIEPFENASVVRFRVDGTLRDVVRPKKALH HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH GALISRIKIMAQLDIAEKRLPQDGRITLRVGGRPVDVRVSTLPTGHGERAVLRLLEKDAQ HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHHHH RLNLEALGMGRDTLVQFDKLIGRPHGIVLVTGPTGSGKTTTLYASMSRLETATTNIMTVE HCCHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHCCEEEEC DPIEYDLSGIGQTQVNERIGMTFARALRSILRQDPDVIMIGEIRDLETAQIAVQASLTGH CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHEEEEEECCCE LVLATLHTNDAASAVTRLTDMGVEPYLLASSLLGVLAQRLVRQLCPVCKEERHEDGRTVW EEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE HPVGCAKCGHSGYAGRRGVYELLVIDDSIRSLIHRNAADAEILAAGRAEGMRTLRDDAER CCCCHHHCCCCCCCCCCCCEEEEEECHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHH WLASGATSLEEVLRVTGGA HHHCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1429461 [H]