| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688077
Identifier: 116688077
GI number: 116688077
Start: 53785
End: 55158
Strand: Reverse
Name: 116688077
Synonym: Bcen2424_0053
Alternate gene names: NA
Gene position: 55158-53785 (Counterclockwise)
Preceding gene: 116688078
Following gene: 116688076
Centisome position: 1.58
GC content: 73.44
Gene sequence:
>1374_bases GTGAGCACGTTGATTGTTTCTTTGCCGCCGCGCGAGCCTGCCGTGCCGTTGCAGGAATGGCAGTGGCCCGAGCTGCCGTT CACGCTCGTCGACAAGGCCGGCCAGGTGCAGCGCGCGGGCCGCGCCGCGCTCGCGCTGCTGCCGCGCGCGAACGCGACGG TGCTGATCGTCGCCGCACGCGACGTGCTGCTGCTGGCCGCGACCGTGCCGCCGCTGAAGGGGCCGAAGCTGCGCCAGGCG CTGCCCAACATCGTCGAGGATCAACTGATCCAGGACCCGCTCGGCTGCCACATCGCGCTCGATCCGGCCGCGCTGCCCGA CGGGCGTCGCGTACTGGCCGTCGTCGACCGCGCGTGGTTCCGCACGATCTGCGACGCGTTCACCGCGGCCGGCCACCGGC ACCTGAGCGCGGTGCCCGCGACCCGCTGCCTGCCGGCGCCGCGTGCGTCGGCCGAAGCGGCCTCCGCCGTGTTGGCCGAC GGCCAGGCTACCGACGCCGCCGCGCTCGTCGCGGACGTCACCGAGCCGCCTGCCCGCCCGCCGACGGTCGCCGCGGTGCT CGGACTCGCGACGGCGGTCGAACCGGTGCTCGTCGAAGCCGGCGCGCTGCCGGCCGCGGCCGGGGCGCCGCGCCTCGAGC TGGCGGTCGCGCGCGGCGCGCTCGGCGAAGGCTTCGCGGCGCCCGCGTCGCGCGCGGCCGGCACGCTGGCCGCGCTCGCG GGCGGCGGCGACGTCGAACTGTACGAACTCGGCGAACCGGGCGCGGAGCCGCGGCTCGCGTCGGTCGGTCGCACCGACGC GGCGCTGCTGCCGGGCGCCGCGCCGCTGTCGTTCGACACGTTCGCGCGCCGGGCGCTGACCGAACCATTCGATCTGTGCC AGTTCGAATTCGAATCGCAGCCGTGGCGCTTCGACCGCGCGACGGTGAAGCGCCTGCGCGTGCCGATCGCGCTGGCCGCG GCGACGCTCGGCGTCGCGGTGATCGGGATGAACCTGCACTGGTGGAAGCTGTCGCGTGAGCGCGATGCGCTGTCCGCGCA GATCACCGAGACGCTGCTGTCTGCCTTCCCGAAGACGACCACCGTGCTCGATCCGCCCGCGCAGATGCAGCGCCAGCTCG ACCAGCTTCGGCTCGCGGCCGGCGAGCTGTCGCCGAACGATTTCCTCGCGCTGTCGAGCGGCTTGTCGCGCTCGATGGGC GCGCTGCCGCTGAACGGCATCGCGTCGCTCGACTATCACGACCGGCGGCTCGACGTCGGCTTCAAGCCGGAGGTCAAGGT CGATCCCGATTTCACGCAGCGCCTCGCGCGTAACGGACTGTCCGGCGAAGTCGACAGCAACACGGGCAAATGGACGATCC GGAGCCGCTCATGA
Upstream 100 bases:
>100_bases ACCGCACCTCGCTCGTGTATCGTGATCCGACCACGCACTCGACGCGGGTCGTGCGCATCCGCGACCAGCTATAACGACGC CAATCGGGAGAGGAGCTCTT
Downstream 100 bases:
>100_bases AAGCCGAACAACTGAACCAGACGCTGGCCCAGTTCTGGGGCGAGCGCACGCCGCGCGAGAAGACGCTGCTCGGCTGGGGC GGCGCCGTGCTGGCGATCGC
Product: general secretion pathway protein L
Products: NA
Alternate protein names: General Secretion Pathway L; General Secretory Pathway Protein L; General Secretory Pathway L Transmembrane Protein; General Secretion Pathway L Protein; Type II Secretory Pathway Component PulL
Number of amino acids: Translated: 457; Mature: 456
Protein sequence:
>457_residues MSTLIVSLPPREPAVPLQEWQWPELPFTLVDKAGQVQRAGRAALALLPRANATVLIVAARDVLLLAATVPPLKGPKLRQA LPNIVEDQLIQDPLGCHIALDPAALPDGRRVLAVVDRAWFRTICDAFTAAGHRHLSAVPATRCLPAPRASAEAASAVLAD GQATDAAALVADVTEPPARPPTVAAVLGLATAVEPVLVEAGALPAAAGAPRLELAVARGALGEGFAAPASRAAGTLAALA GGGDVELYELGEPGAEPRLASVGRTDAALLPGAAPLSFDTFARRALTEPFDLCQFEFESQPWRFDRATVKRLRVPIALAA ATLGVAVIGMNLHWWKLSRERDALSAQITETLLSAFPKTTTVLDPPAQMQRQLDQLRLAAGELSPNDFLALSSGLSRSMG ALPLNGIASLDYHDRRLDVGFKPEVKVDPDFTQRLARNGLSGEVDSNTGKWTIRSRS
Sequences:
>Translated_457_residues MSTLIVSLPPREPAVPLQEWQWPELPFTLVDKAGQVQRAGRAALALLPRANATVLIVAARDVLLLAATVPPLKGPKLRQA LPNIVEDQLIQDPLGCHIALDPAALPDGRRVLAVVDRAWFRTICDAFTAAGHRHLSAVPATRCLPAPRASAEAASAVLAD GQATDAAALVADVTEPPARPPTVAAVLGLATAVEPVLVEAGALPAAAGAPRLELAVARGALGEGFAAPASRAAGTLAALA GGGDVELYELGEPGAEPRLASVGRTDAALLPGAAPLSFDTFARRALTEPFDLCQFEFESQPWRFDRATVKRLRVPIALAA ATLGVAVIGMNLHWWKLSRERDALSAQITETLLSAFPKTTTVLDPPAQMQRQLDQLRLAAGELSPNDFLALSSGLSRSMG ALPLNGIASLDYHDRRLDVGFKPEVKVDPDFTQRLARNGLSGEVDSNTGKWTIRSRS >Mature_456_residues STLIVSLPPREPAVPLQEWQWPELPFTLVDKAGQVQRAGRAALALLPRANATVLIVAARDVLLLAATVPPLKGPKLRQAL PNIVEDQLIQDPLGCHIALDPAALPDGRRVLAVVDRAWFRTICDAFTAAGHRHLSAVPATRCLPAPRASAEAASAVLADG QATDAAALVADVTEPPARPPTVAAVLGLATAVEPVLVEAGALPAAAGAPRLELAVARGALGEGFAAPASRAAGTLAALAG GGDVELYELGEPGAEPRLASVGRTDAALLPGAAPLSFDTFARRALTEPFDLCQFEFESQPWRFDRATVKRLRVPIALAAA TLGVAVIGMNLHWWKLSRERDALSAQITETLLSAFPKTTTVLDPPAQMQRQLDQLRLAAGELSPNDFLALSSGLSRSMGA LPLNGIASLDYHDRRLDVGFKPEVKVDPDFTQRLARNGLSGEVDSNTGKWTIRSRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48192; Mature: 48061
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLIVSLPPREPAVPLQEWQWPELPFTLVDKAGQVQRAGRAALALLPRANATVLIVAAR CCEEEEECCCCCCCCCHHCCCCCCCCHHHHCCCCHHHHHCCCEEEEECCCCCEEEEEEEC DVLLLAATVPPLKGPKLRQALPNIVEDQLIQDPLGCHIALDPAALPDGRRVLAVVDRAWF CEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEHHHHHHHHH RTICDAFTAAGHRHLSAVPATRCLPAPRASAEAASAVLADGQATDAAALVADVTEPPARP HHHHHHHHHCCCCHHHCCCHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHEECCCCCCCC PTVAAVLGLATAVEPVLVEAGALPAAAGAPRLELAVARGALGEGFAAPASRAAGTLAALA CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHCCCCCCCCCCHHHHHHHHHEEC GGGDVELYELGEPGAEPRLASVGRTDAALLPGAAPLSFDTFARRALTEPFDLCQFEFESQ CCCCEEEEECCCCCCCCCHHHCCCCCHHHCCCCCCCCHHHHHHHHHCCCHHHHHEECCCC PWRFDRATVKRLRVPIALAAATLGVAVIGMNLHWWKLSRERDALSAQITETLLSAFPKTT CCCCHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEECCCHHHHHHHHHHHHHHHHCCCCC TVLDPPAQMQRQLDQLRLAAGELSPNDFLALSSGLSRSMGALPLNGIASLDYHDRRLDVG EEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHCCCCCCCCCEECCCCCCCEECCC FKPEVKVDPDFTQRLARNGLSGEVDSNTGKWTIRSRS CCCCEEECHHHHHHHHHCCCCCCCCCCCCEEEEECCC >Mature Secondary Structure STLIVSLPPREPAVPLQEWQWPELPFTLVDKAGQVQRAGRAALALLPRANATVLIVAAR CEEEEECCCCCCCCCHHCCCCCCCCHHHHCCCCHHHHHCCCEEEEECCCCCEEEEEEEC DVLLLAATVPPLKGPKLRQALPNIVEDQLIQDPLGCHIALDPAALPDGRRVLAVVDRAWF CEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEHHHHHHHHH RTICDAFTAAGHRHLSAVPATRCLPAPRASAEAASAVLADGQATDAAALVADVTEPPARP HHHHHHHHHCCCCHHHCCCHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHEECCCCCCCC PTVAAVLGLATAVEPVLVEAGALPAAAGAPRLELAVARGALGEGFAAPASRAAGTLAALA CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHCCCCCCCCCCHHHHHHHHHEEC GGGDVELYELGEPGAEPRLASVGRTDAALLPGAAPLSFDTFARRALTEPFDLCQFEFESQ CCCCEEEEECCCCCCCCCHHHCCCCCHHHCCCCCCCCHHHHHHHHHCCCHHHHHEECCCC PWRFDRATVKRLRVPIALAAATLGVAVIGMNLHWWKLSRERDALSAQITETLLSAFPKTT CCCCHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEECCCHHHHHHHHHHHHHHHHCCCCC TVLDPPAQMQRQLDQLRLAAGELSPNDFLALSSGLSRSMGALPLNGIASLDYHDRRLDVG EEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHCCCCCCCCCEECCCCCCCEECCC FKPEVKVDPDFTQRLARNGLSGEVDSNTGKWTIRSRS CCCCEEECHHHHHHHHHCCCCCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA