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The map label for this gene is sigK [H]

Identifier: 116626884

GI number: 116626884

Start: 9860066

End: 9860653

Strand: Direct

Name: sigK [H]

Synonym: Acid_7860

Alternate gene names: 116626884

Gene position: 9860066-9860653 (Clockwise)

Preceding gene: 116626883

Following gene: 116626885

Centisome position: 98.94

GC content: 58.33

Gene sequence:

>588_bases
ATGATGCTGCTTCCCATATTTTTGGCTATACACGCCACGGAGGACGATAGCGGTCTTGTTGCACGCATGCAACGACGGGA
CCCGCAGGCCCTCGCGGAGCTTTACGATCGCTATGGCCGCGTGACCTACGCGCTTATATTGCGCGTGGTACGCGATGTGG
GGATCGCGGAAGACCTGGTGCAGGAAACATTTTTGCGGGTGTGGAACCGCGTTCACGGCTTCGACGCGCAGAAGGGGTCG
ATCAGTCCGTGGCTGCTTGCGGTAGCACGCAATCGGGCGATCGATTACCTGCGCTCGGCCGGCGGGCGCGAGCGCAATGC
CCTGGAATTCGAGGAGACCGAGCATCCCGCCTTGTACATTGATATGGAGAAGGATATTTTGAGCGCGGATAACGCCCGCA
AAATCAAGTCGGCGGTGGAGAAGCTGAATCCAAATCAACGCCAGGTGATCGAGCTGGCCTATTACGAAGGTCTGTCGCAA
ACCGAAATGGCGGAGCGTATGGGACAGCCGCTAGGCACGGTGAAAACCTGGGTCCGTTCGGCTCTAAAAAATTTGCGCGA
CGATCTTGGCGCGGTGGTGCCGGCATGA

Upstream 100 bases:

>100_bases
GCATGATGCGCGGAAAATTCCACTGCGGCCTAAATCTTGATCGCGTCCGCGACTCGTATATACAATTAGACGCGCCCGGA
ACGCGGGCGAGGCTCTTCGC

Downstream 100 bases:

>100_bases
ACTGCAATGAACTCCGCGAGCACTATGAGCTGTTTGCGATCGGCGTTGCCGATGAGCCGGAGCGCAGCGAAATTCGTGCG
CACTTGAATCGCCAGTGCGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MMLLPIFLAIHATEDDSGLVARMQRRDPQALAELYDRYGRVTYALILRVVRDVGIAEDLVQETFLRVWNRVHGFDAQKGS
ISPWLLAVARNRAIDYLRSAGGRERNALEFEETEHPALYIDMEKDILSADNARKIKSAVEKLNPNQRQVIELAYYEGLSQ
TEMAERMGQPLGTVKTWVRSALKNLRDDLGAVVPA

Sequences:

>Translated_195_residues
MMLLPIFLAIHATEDDSGLVARMQRRDPQALAELYDRYGRVTYALILRVVRDVGIAEDLVQETFLRVWNRVHGFDAQKGS
ISPWLLAVARNRAIDYLRSAGGRERNALEFEETEHPALYIDMEKDILSADNARKIKSAVEKLNPNQRQVIELAYYEGLSQ
TEMAERMGQPLGTVKTWVRSALKNLRDDLGAVVPA
>Mature_195_residues
MMLLPIFLAIHATEDDSGLVARMQRRDPQALAELYDRYGRVTYALILRVVRDVGIAEDLVQETFLRVWNRVHGFDAQKGS
ISPWLLAVARNRAIDYLRSAGGRERNALEFEETEHPALYIDMEKDILSADNARKIKSAVEKLNPNQRQVIELAYYEGLSQ
TEMAERMGQPLGTVKTWVRSALKNLRDDLGAVVPA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 22125; Mature: 22125

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLLPIFLAIHATEDDSGLVARMQRRDPQALAELYDRYGRVTYALILRVVRDVGIAEDLV
CHHHHEEHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
QETFLRVWNRVHGFDAQKGSISPWLLAVARNRAIDYLRSAGGRERNALEFEETEHPALYI
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
DMEKDILSADNARKIKSAVEKLNPNQRQVIELAYYEGLSQTEMAERMGQPLGTVKTWVRS
ECCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
ALKNLRDDLGAVVPA
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MMLLPIFLAIHATEDDSGLVARMQRRDPQALAELYDRYGRVTYALILRVVRDVGIAEDLV
CHHHHEEHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
QETFLRVWNRVHGFDAQKGSISPWLLAVARNRAIDYLRSAGGRERNALEFEETEHPALYI
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
DMEKDILSADNARKIKSAVEKLNPNQRQVIELAYYEGLSQTEMAERMGQPLGTVKTWVRS
ECCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
ALKNLRDDLGAVVPA
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]