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The map label for this gene is lsrC [H]

Identifier: 116626852

GI number: 116626852

Start: 9806033

End: 9806995

Strand: Direct

Name: lsrC [H]

Synonym: Acid_7825

Alternate gene names: 116626852

Gene position: 9806033-9806995 (Clockwise)

Preceding gene: 116626851

Following gene: 116626853

Centisome position: 98.4

GC content: 65.94

Gene sequence:

>963_bases
ATGTTCGAACGCCACCGGCGTGAAATCTCCCTGATCGCCGCCATTCTGGTATTGGGCGCGGTGCTGGCCGCCGCGGCTCC
CGGATTTTTCACGTTCGCCAATCAGCGCGACCTGGTGCTGGCCAACATGCCGGTGCTGATTGTGGCGCTGGGTATGGTGC
TGGTGATTCTCACCGGCCAGATCGATATTTCGGTGGGCTCGCAGTTCGCCATCTGCAGCGTGGCCACCGGAGTGTTCGCG
CGCATGGGTCTGCCGACGCCGTTGGCGGGCGCGGCGGCCTGCCTGCTGGGCGCGCTGATGGGCGCACTCAATGGAGTGCT
GGTGGCGTGGGTGCGGATTCCCGCGATCGTGGTCACGCTGGCTACGATGGTGGCGCTGCGCGATGGCTTGCGCTGGGTGA
CTCAGGGCGCGTGGGTGGAAAACCTGCCGCCCGGATTTCAATGGTTCGGCCAATCGCAGGAGGTGAGCGAGGCGATCACG
ATCGGCTGCGCGCTCGCGCTCACGGTCGGTATGAGTTGGGGACTGCGCAATCTGGCGGCAGGCCGCGTGGTCTATGCCAC
CGGCAGCGATCCGAACGCCGCGCGGCTCGCGGGAGTGAATCCCGCGCGCGTGGTCTTCGCCGCCTTTGTGATCACGGGGG
CGCTCACGGGCTTTGCGGCGGTATTCAACGCGGTGCGCTTTCACCAGATTCCCAGTAATGCCGGAATGGGACTGGAGCTC
AAGGTGATCGCGGCGGCGGTGGTGGGCGGCGTGTCGATCTCCGGAGGGCGCGGCACCATCGCCGGCACCATGCTCGGGCT
GCTGCTGTTGGGCGTGATCGGGCCGGCGCTGACGTTTCTCGGCCTGAGCGCTTATTGGGAACGCGCGATCGAAGGCGGCA
TCATTCTGGCGGCGGTATCGATGGATGCCGTGCGCGTACATTCGGGGAAATATGGCAACGTCGTTGGCGCTCAGCGAGCA
TAG

Upstream 100 bases:

>100_bases
ACCGCATCGCCGTGATGCATGGGGGCACCATGACGGGCATTCTGACGCGCGCCGAGGCGACGCAGGAAAAGATTCTCGCC
ATGGCGCTGGGGCACTCCTG

Downstream 100 bases:

>100_bases
GCCGTGGCGCGAACGGCTCTTTCCCAATGGGGAGTGGGCGCTCGGCCTGGCGCTCGCCGTGGAACTGGCGATCTTTGCCA
CGATCGGCGAGAACTTCTTC

Product: inner-membrane translocator

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MFERHRREISLIAAILVLGAVLAAAAPGFFTFANQRDLVLANMPVLIVALGMVLVILTGQIDISVGSQFAICSVATGVFA
RMGLPTPLAGAAACLLGALMGALNGVLVAWVRIPAIVVTLATMVALRDGLRWVTQGAWVENLPPGFQWFGQSQEVSEAIT
IGCALALTVGMSWGLRNLAAGRVVYATGSDPNAARLAGVNPARVVFAAFVITGALTGFAAVFNAVRFHQIPSNAGMGLEL
KVIAAAVVGGVSISGGRGTIAGTMLGLLLLGVIGPALTFLGLSAYWERAIEGGIILAAVSMDAVRVHSGKYGNVVGAQRA

Sequences:

>Translated_320_residues
MFERHRREISLIAAILVLGAVLAAAAPGFFTFANQRDLVLANMPVLIVALGMVLVILTGQIDISVGSQFAICSVATGVFA
RMGLPTPLAGAAACLLGALMGALNGVLVAWVRIPAIVVTLATMVALRDGLRWVTQGAWVENLPPGFQWFGQSQEVSEAIT
IGCALALTVGMSWGLRNLAAGRVVYATGSDPNAARLAGVNPARVVFAAFVITGALTGFAAVFNAVRFHQIPSNAGMGLEL
KVIAAAVVGGVSISGGRGTIAGTMLGLLLLGVIGPALTFLGLSAYWERAIEGGIILAAVSMDAVRVHSGKYGNVVGAQRA
>Mature_320_residues
MFERHRREISLIAAILVLGAVLAAAAPGFFTFANQRDLVLANMPVLIVALGMVLVILTGQIDISVGSQFAICSVATGVFA
RMGLPTPLAGAAACLLGALMGALNGVLVAWVRIPAIVVTLATMVALRDGLRWVTQGAWVENLPPGFQWFGQSQEVSEAIT
IGCALALTVGMSWGLRNLAAGRVVYATGSDPNAARLAGVNPARVVFAAFVITGALTGFAAVFNAVRFHQIPSNAGMGLEL
KVIAAAVVGGVSISGGRGTIAGTMLGLLLLGVIGPALTFLGLSAYWERAIEGGIILAAVSMDAVRVHSGKYGNVVGAQRA

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=303, Percent_Identity=37.2937293729373, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787793, Length=312, Percent_Identity=36.2179487179487, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790191, Length=304, Percent_Identity=34.2105263157895, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI145693152, Length=315, Percent_Identity=31.7460317460317, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1789992, Length=362, Percent_Identity=29.2817679558011, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790524, Length=294, Percent_Identity=28.2312925170068, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87082395, Length=304, Percent_Identity=29.6052631578947, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788471, Length=331, Percent_Identity=30.5135951661631, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI145693214, Length=241, Percent_Identity=34.8547717842324, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787794, Length=268, Percent_Identity=31.3432835820896, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32829; Mature: 32829

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFERHRREISLIAAILVLGAVLAAAAPGFFTFANQRDLVLANMPVLIVALGMVLVILTGQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEECCHHHHHHHHHHHHHHCCC
IDISVGSQFAICSVATGVFARMGLPTPLAGAAACLLGALMGALNGVLVAWVRIPAIVVTL
EEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATMVALRDGLRWVTQGAWVENLPPGFQWFGQSQEVSEAITIGCALALTVGMSWGLRNLAA
HHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCC
GRVVYATGSDPNAARLAGVNPARVVFAAFVITGALTGFAAVFNAVRFHQIPSNAGMGLEL
CEEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEH
KVIAAAVVGGVSISGGRGTIAGTMLGLLLLGVIGPALTFLGLSAYWERAIEGGIILAAVS
HHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
MDAVRVHSGKYGNVVGAQRA
HHHEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MFERHRREISLIAAILVLGAVLAAAAPGFFTFANQRDLVLANMPVLIVALGMVLVILTGQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEECCHHHHHHHHHHHHHHCCC
IDISVGSQFAICSVATGVFARMGLPTPLAGAAACLLGALMGALNGVLVAWVRIPAIVVTL
EEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATMVALRDGLRWVTQGAWVENLPPGFQWFGQSQEVSEAITIGCALALTVGMSWGLRNLAA
HHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCC
GRVVYATGSDPNAARLAGVNPARVVFAAFVITGALTGFAAVFNAVRFHQIPSNAGMGLEL
CEEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEH
KVIAAAVVGGVSISGGRGTIAGTMLGLLLLGVIGPALTFLGLSAYWERAIEGGIILAAVS
HHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
MDAVRVHSGKYGNVVGAQRA
HHHEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA