Click here to switch to the map view.

The map label for this gene is ybaV [C]

Identifier: 116626848

GI number: 116626848

Start: 9802722

End: 9803183

Strand: Direct

Name: ybaV [C]

Synonym: Acid_7821

Alternate gene names: 116626848

Gene position: 9802722-9803183 (Clockwise)

Preceding gene: 116626847

Following gene: 116626849

Centisome position: 98.37

GC content: 60.61

Gene sequence:

>462_bases
ATGCACTCACTTTCTGTGAAGAGTCTGGCGGCATTGATCGTGTTGGCTGGTGGCGCGTGGGCGCAGGGAGCACCTCCTGG
ACGCGCGGAGGCCGAGCGCATCTGCAGCCAGTGCCATGAGTTTGCGCGCTCGATTGCGCCGCGCCAGAATCGCGCGGGCT
GGCAGGCCACCATGGACAAGATGATCGCGCTCGGCGCAAAGGGCACGCAGAAGGACTTCGACGCGATCGTGGACTATCTG
GCGGCGACGTATCCCGCCGACGAAATCCCCAAGATCAACGTAAACGAAGCGCGGGCCGTGGAACTGGAGAGCGGACTTTC
GCTGCCGCGCTCGCAAGCAGCCGCGATTATTCAGTACCGGACCAAGAATGGCGACTTCCATTCGATCGAAGATCTGAAGA
AAGTTCCCGGCGTGGACGCGGCCAAAATCGAAGCCAAGAAAGACCGGCTGTTGTTCAAATAG

Upstream 100 bases:

>100_bases
CCCTCGCGGTCGCGGCTCTGATCGGGGGCCAGTTCGGGCCGCAAGAATCTGCGGCCTGCAGGCAGACAAGGTCACAGCAG
TACACAATAGACTGGGGATT

Downstream 100 bases:

>100_bases
AAGGCGCGGCGATGAACACATCGAAAGATCGCGGGGACATTGATGCTGGTATTGGGGCCGCGCTGGCGCGGACACCGCCG
GCAGCTGGGCGTGGCGGACG

Product: helix-hairpin-helix repeat-containing competence protein ComEA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MHSLSVKSLAALIVLAGGAWAQGAPPGRAEAERICSQCHEFARSIAPRQNRAGWQATMDKMIALGAKGTQKDFDAIVDYL
AATYPADEIPKINVNEARAVELESGLSLPRSQAAAIIQYRTKNGDFHSIEDLKKVPGVDAAKIEAKKDRLLFK

Sequences:

>Translated_153_residues
MHSLSVKSLAALIVLAGGAWAQGAPPGRAEAERICSQCHEFARSIAPRQNRAGWQATMDKMIALGAKGTQKDFDAIVDYL
AATYPADEIPKINVNEARAVELESGLSLPRSQAAAIIQYRTKNGDFHSIEDLKKVPGVDAAKIEAKKDRLLFK
>Mature_153_residues
MHSLSVKSLAALIVLAGGAWAQGAPPGRAEAERICSQCHEFARSIAPRQNRAGWQATMDKMIALGAKGTQKDFDAIVDYL
AATYPADEIPKINVNEARAVELESGLSLPRSQAAAIIQYRTKNGDFHSIEDLKKVPGVDAAKIEAKKDRLLFK

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16558; Mature: 16558

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSLSVKSLAALIVLAGGAWAQGAPPGRAEAERICSQCHEFARSIAPRQNRAGWQATMDK
CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
MIALGAKGTQKDFDAIVDYLAATYPADEIPKINVNEARAVELESGLSLPRSQAAAIIQYR
HHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHCCCCCCHHHHHHHHEEE
TKNGDFHSIEDLKKVPGVDAAKIEAKKDRLLFK
CCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MHSLSVKSLAALIVLAGGAWAQGAPPGRAEAERICSQCHEFARSIAPRQNRAGWQATMDK
CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
MIALGAKGTQKDFDAIVDYLAATYPADEIPKINVNEARAVELESGLSLPRSQAAAIIQYR
HHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHCCCCCCHHHHHHHHEEE
TKNGDFHSIEDLKKVPGVDAAKIEAKKDRLLFK
CCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA