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The map label for this gene is rpoE [H]

Identifier: 116626802

GI number: 116626802

Start: 9758774

End: 9759340

Strand: Direct

Name: rpoE [H]

Synonym: Acid_7775

Alternate gene names: 116626802

Gene position: 9758774-9759340 (Clockwise)

Preceding gene: 116626800

Following gene: 116626803

Centisome position: 97.92

GC content: 58.73

Gene sequence:

>567_bases
TTGATCTTTCGGGCGGTCGAAGATACCGACCTGATTCGCCAGGCAACCAAAGGTAGCGTGGAGTCCTACAACCTCCTCGT
CTCCCGATGGGAAAAACGCATTTACAACTATTTGCTGCGAATCACGGCCAACCGGGAAGACGCTTTGGACTTGACGCAGG
ACGTGTTCTTGAAAGCCTACCAGAACCTCCGCAAACTCGACGACTCGGCCCGCTTCGCACCCTGGCTGTACCGCATCGCT
CACAACGAAGCCTACAGCATGTTCCGCAAGCGCAGGCCCGAGACCGACGTCGATGAGCTCGAACCCGAGGCCACCGAAAT
CGGCATCACTGTCGGCGGCAGCTCAGTCTTTCCCGTCGAGCTCTCGATCGCCGTAGCCACCGCGCTAGACCGGTTGTCGC
CCGACCAGCGCGAGGCCGTCGTCCTCAAAATCTACCAGGGCTTCAAATTCGAGGAGATGGCCGAAATCCTCTCCTGCCCT
GTGTCCACCGTCAAGTCCCGTCTCTACACCGCACTCGAACTCCTCAAGGCCGAACTGGCTCCCGTTAAGGCAAGAGGTGT
GTCATGA

Upstream 100 bases:

>100_bases
CGCATGGCCCGTTTTCACTTCCCGCCCGGGTTAGAATGGTATCTACCGCGCGCCGACTTTTTGTGGGCGTACTGCGTCTA
GTCACAAGGAGCCAGAGAAT

Downstream 100 bases:

>100_bases
GTTGCTCGCCATTCGATTTGAATGATTACTTCCTCAAGGAACTGCCGTCCCCGCAGCGGCTCCAGGTGGAAGCGCACGTA
AGAACCTGCGATGCCTGCCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MIFRAVEDTDLIRQATKGSVESYNLLVSRWEKRIYNYLLRITANREDALDLTQDVFLKAYQNLRKLDDSARFAPWLYRIA
HNEAYSMFRKRRPETDVDELEPEATEIGITVGGSSVFPVELSIAVATALDRLSPDQREAVVLKIYQGFKFEEMAEILSCP
VSTVKSRLYTALELLKAELAPVKARGVS

Sequences:

>Translated_188_residues
MIFRAVEDTDLIRQATKGSVESYNLLVSRWEKRIYNYLLRITANREDALDLTQDVFLKAYQNLRKLDDSARFAPWLYRIA
HNEAYSMFRKRRPETDVDELEPEATEIGITVGGSSVFPVELSIAVATALDRLSPDQREAVVLKIYQGFKFEEMAEILSCP
VSTVKSRLYTALELLKAELAPVKARGVS
>Mature_188_residues
MIFRAVEDTDLIRQATKGSVESYNLLVSRWEKRIYNYLLRITANREDALDLTQDVFLKAYQNLRKLDDSARFAPWLYRIA
HNEAYSMFRKRRPETDVDELEPEATEIGITVGGSSVFPVELSIAVATALDRLSPDQREAVVLKIYQGFKFEEMAEILSCP
VSTVKSRLYTALELLKAELAPVKARGVS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=186, Percent_Identity=33.8709677419355, Blast_Score=97, Evalue=8e-22,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21437; Mature: 21437

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFRAVEDTDLIRQATKGSVESYNLLVSRWEKRIYNYLLRITANREDALDLTQDVFLKAY
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
QNLRKLDDSARFAPWLYRIAHNEAYSMFRKRRPETDVDELEPEATEIGITVGGSSVFPVE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHEEEEEECCCEEEHHH
LSIAVATALDRLSPDQREAVVLKIYQGFKFEEMAEILSCPVSTVKSRLYTALELLKAELA
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
PVKARGVS
CCCCCCCC
>Mature Secondary Structure
MIFRAVEDTDLIRQATKGSVESYNLLVSRWEKRIYNYLLRITANREDALDLTQDVFLKAY
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
QNLRKLDDSARFAPWLYRIAHNEAYSMFRKRRPETDVDELEPEATEIGITVGGSSVFPVE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHEEEEEECCCEEEHHH
LSIAVATALDRLSPDQREAVVLKIYQGFKFEEMAEILSCPVSTVKSRLYTALELLKAELA
HHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
PVKARGVS
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]