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The map label for this gene is yccM [C]

Identifier: 116626624

GI number: 116626624

Start: 9512493

End: 9514793

Strand: Direct

Name: yccM [C]

Synonym: Acid_7587

Alternate gene names: 116626624

Gene position: 9512493-9514793 (Clockwise)

Preceding gene: 116626623

Following gene: 116626625

Centisome position: 95.45

GC content: 62.84

Gene sequence:

>2301_bases
ATGGCAATTGAGCCCGCGATCGCGGCACGCTCCGATGTTATCCAAGCTGCGCTCAGTTCATGGTCCGTTCCCTTCTGGGC
GACAGTGGGCGTCCTGCTCGCCGCGGTCCTCTACGTCAGGGGCTGGAAAGATCTTGCGTACCTGCGCTCCACCCTGATAC
CCCCTTGGCGGCTGGTCTGTTTCCTCGCGGGCCTGGCGTCGCTTTGGCTGGCCATTGCGTCTCCCCTGGACGCTTTTGGG
AACTTCCTGCTCACGGCTCACATGGTGCAGCACCTGTTGATGATGGTTGTCGCGCCTCCACTCATACTGCTTGGATCCCC
ATGGAATTTGCTGCTTCGCGGTCTGCCGCGATGGGCGGCACGCGACGTACTGGGGCCGTTTCTCTCGTGGGATTTTCTCA
AACGCTTCGGGCGCCTGGTGACTCACCCTGCCTTCTGCTGGCTCGCAGGTGCCGTGGCGCTGCTCGGGTGGCATATTCCG
GCAGCGTACGATCGTGCCCTCGCTTCTCCGGGCTGGCACGATTTTGAACACGCCTGCCTGTTCGGAAGTTCTCTGCTGTT
CTGGTGGCCCGTGGTGCAGCCGTGGCCCGCGATTGCGCGATGGCATCGCTGGACGATCCCTGTCTACCTGTTGTGCGGCG
ATCTGGCCGCCTCCGCGCTCGCGGGAGTTCTCTGCTTCTCCGAACGGCCGCTCTACTCGGCGTATGCTACCGTCCCTCGG
CTCTTTGGCATGTCCCAACTCAGCGATCAGATCACGGCGGGAGCGATCATGTGGGTTTTCGGTTCCTCCGTACTGCTGGG
CGCCGCGGTAATCGTCACTCTGCGGCTGCTCGACCCTTCGTTAGCCGCGCGGAAGCATCCTCTCCCAACCTGGGCGGCGC
CGTCGAGGCGTCCGCCTTTTGATCTCCTCCGTGCCCCGGTGGCCGGTGCCTTCCTCCGCGCGCGGTACGGGCGCCGCGCG
TTGCAATCCTGCCTGTTGATGATTGCTGTTGCGGTAATCGCGGACGGCTTCTTCGGCCATCCGATGGCTCCGATGAATCT
CGCCGGTGTGCTCCCCTGGACCTACGGGCGCGCCTTCGTCCTAGTGGGCCTGATGGCGGCCGGGAATTTTTTCTGTATGG
GCTGCCCGTTCACGTTGCCACGCGAACTGGGGCGGCGCCTGGGTCTGGCAACACGATACTGGCCGCGCACGTTGCGAACC
AAGTGGCTCGCCGTGGGGCTGCTTGTCCTGTTTTTCTGGGCCTACGAGAAATTCGACTTCTGGGATAAACCGAGACTTAC
CGCGTGGATTCTTCTAGGCTATTTCGTAGCCGCCTTTTCGGTGGACACATTCTTTCGCGGCGCGAGTTTCTGCAAGTACG
TGTGCCCCATCGGCCAGTTCAACTTTGTCGCTTCGCTGGTGTCGCCTTTGGAAGTCAGGATTCGCAGCCGCCAAGCCTGT
ACGGCTTGCGCCACTCACGATTGCGCACGGGGCAACCAGAACCAGCGCGGTTGCGAGCTTGACCTGTTTCTCCCTCGCAA
GGCGGGGAACATGGACTGCACGTTTTGCCTGGACTGCGTAAAGGCATGTCCGCACGACAATATCGGGATCGTCATTCTCG
CTCCCGCACGCGAGCTTGCGGGAGACCCCGTGCGCTCCAATTTGGGGCGCTTCTCACGCCGCCCCGATATCGCGGTGCTG
GCACTGGTGGTGGTCTTCTCGGCATTTCTGAGCGCTGCCGCTATGGTGGCGTCCGTGGTCGCATCGCGCGACCGCCTCAT
TACGCACTTCCCAGCGATCGCTACACTACCGGTCACCGCCTTGTTCTTTCTGCTCGCTTTGGCGCTGGCGCCGGCGTTCC
TGGTAGCGGGTGCAGTGCGGCTTGGCCGGACCGCGGCCCGGATCAGGAGATCAGGACGGGAGCTTTTCTGCCGCTTCTCG
TTTGCTTTGCTTCCAATTGGTCTGGCGATGTGGCTGTCGCATGTGCTCTTCCACTTGTCCAATGGGTGGGGCACCGCCTG
GTCCGCCGCGCAGCAGGCCGCAGGCGAGATGGGCATCGGTTGGCTCGGCGCGCCGCGCTGGGTCGCGTCTGCTCCCCTTG
TGGCTCCGGATACGATGCTCGCGATCCAGATGCTGGTGATGGACGCGGGAGTTCTGTGGTCGTTGTATCTGGGCTGGCGC
ATCGCCGGGGACTATACGAACCGCACTCAGGACCTCCTGAAACTGCTTGCCCCCTGGGCGGTGGTTGCTGCGCTGTTATA
CGCCGCGGGAGTTTCGGTGTTCCTTCAGCCGATGCAAATGCGGGGGATGATACACGGATGA

Upstream 100 bases:

>100_bases
AAAACGCTGCACCCGGCAGGCCAGGCACCGGCTCGCGACGCCTTTGGCGAAGCCGTACTCGGAGCCAATGGGGAGGAAGC
CGGCGCGAGGTCGTCCCACA

Downstream 100 bases:

>100_bases
ACGCCACGCTCGTTCTCCTGATCGTCGCCACGATCTGTTGTCCGGCTGCGAACGCCGACGGAGGAACGGTTCGACTGCGC
GAGGCATCCGGACCTTTTAT

Product: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein

Products: NA

Alternate protein names: Nitrogen Assimilation Regulatory Protein; Sigma-54 Interaction Domain Family; Copper Resistance D; Copper Resistance Protein D; Polyferredoxin-Like Protein; Nitrogen Regulatory Protein; Transcriptional Regulator; ABC Transporter Permease; Sigma-54 Factor; Transcriptional Regulator Protein; Polyferredoxin; Cytochrome C Oxidase Caa3 Assembly Factor Superfamily; CtaG Protein; Copper Resistance D Domain-Containing Protein

Number of amino acids: Translated: 766; Mature: 765

Protein sequence:

>766_residues
MAIEPAIAARSDVIQAALSSWSVPFWATVGVLLAAVLYVRGWKDLAYLRSTLIPPWRLVCFLAGLASLWLAIASPLDAFG
NFLLTAHMVQHLLMMVVAPPLILLGSPWNLLLRGLPRWAARDVLGPFLSWDFLKRFGRLVTHPAFCWLAGAVALLGWHIP
AAYDRALASPGWHDFEHACLFGSSLLFWWPVVQPWPAIARWHRWTIPVYLLCGDLAASALAGVLCFSERPLYSAYATVPR
LFGMSQLSDQITAGAIMWVFGSSVLLGAAVIVTLRLLDPSLAARKHPLPTWAAPSRRPPFDLLRAPVAGAFLRARYGRRA
LQSCLLMIAVAVIADGFFGHPMAPMNLAGVLPWTYGRAFVLVGLMAAGNFFCMGCPFTLPRELGRRLGLATRYWPRTLRT
KWLAVGLLVLFFWAYEKFDFWDKPRLTAWILLGYFVAAFSVDTFFRGASFCKYVCPIGQFNFVASLVSPLEVRIRSRQAC
TACATHDCARGNQNQRGCELDLFLPRKAGNMDCTFCLDCVKACPHDNIGIVILAPARELAGDPVRSNLGRFSRRPDIAVL
ALVVVFSAFLSAAAMVASVVASRDRLITHFPAIATLPVTALFFLLALALAPAFLVAGAVRLGRTAARIRRSGRELFCRFS
FALLPIGLAMWLSHVLFHLSNGWGTAWSAAQQAAGEMGIGWLGAPRWVASAPLVAPDTMLAIQMLVMDAGVLWSLYLGWR
IAGDYTNRTQDLLKLLAPWAVVAALLYAAGVSVFLQPMQMRGMIHG

Sequences:

>Translated_766_residues
MAIEPAIAARSDVIQAALSSWSVPFWATVGVLLAAVLYVRGWKDLAYLRSTLIPPWRLVCFLAGLASLWLAIASPLDAFG
NFLLTAHMVQHLLMMVVAPPLILLGSPWNLLLRGLPRWAARDVLGPFLSWDFLKRFGRLVTHPAFCWLAGAVALLGWHIP
AAYDRALASPGWHDFEHACLFGSSLLFWWPVVQPWPAIARWHRWTIPVYLLCGDLAASALAGVLCFSERPLYSAYATVPR
LFGMSQLSDQITAGAIMWVFGSSVLLGAAVIVTLRLLDPSLAARKHPLPTWAAPSRRPPFDLLRAPVAGAFLRARYGRRA
LQSCLLMIAVAVIADGFFGHPMAPMNLAGVLPWTYGRAFVLVGLMAAGNFFCMGCPFTLPRELGRRLGLATRYWPRTLRT
KWLAVGLLVLFFWAYEKFDFWDKPRLTAWILLGYFVAAFSVDTFFRGASFCKYVCPIGQFNFVASLVSPLEVRIRSRQAC
TACATHDCARGNQNQRGCELDLFLPRKAGNMDCTFCLDCVKACPHDNIGIVILAPARELAGDPVRSNLGRFSRRPDIAVL
ALVVVFSAFLSAAAMVASVVASRDRLITHFPAIATLPVTALFFLLALALAPAFLVAGAVRLGRTAARIRRSGRELFCRFS
FALLPIGLAMWLSHVLFHLSNGWGTAWSAAQQAAGEMGIGWLGAPRWVASAPLVAPDTMLAIQMLVMDAGVLWSLYLGWR
IAGDYTNRTQDLLKLLAPWAVVAALLYAAGVSVFLQPMQMRGMIHG
>Mature_765_residues
AIEPAIAARSDVIQAALSSWSVPFWATVGVLLAAVLYVRGWKDLAYLRSTLIPPWRLVCFLAGLASLWLAIASPLDAFGN
FLLTAHMVQHLLMMVVAPPLILLGSPWNLLLRGLPRWAARDVLGPFLSWDFLKRFGRLVTHPAFCWLAGAVALLGWHIPA
AYDRALASPGWHDFEHACLFGSSLLFWWPVVQPWPAIARWHRWTIPVYLLCGDLAASALAGVLCFSERPLYSAYATVPRL
FGMSQLSDQITAGAIMWVFGSSVLLGAAVIVTLRLLDPSLAARKHPLPTWAAPSRRPPFDLLRAPVAGAFLRARYGRRAL
QSCLLMIAVAVIADGFFGHPMAPMNLAGVLPWTYGRAFVLVGLMAAGNFFCMGCPFTLPRELGRRLGLATRYWPRTLRTK
WLAVGLLVLFFWAYEKFDFWDKPRLTAWILLGYFVAAFSVDTFFRGASFCKYVCPIGQFNFVASLVSPLEVRIRSRQACT
ACATHDCARGNQNQRGCELDLFLPRKAGNMDCTFCLDCVKACPHDNIGIVILAPARELAGDPVRSNLGRFSRRPDIAVLA
LVVVFSAFLSAAAMVASVVASRDRLITHFPAIATLPVTALFFLLALALAPAFLVAGAVRLGRTAARIRRSGRELFCRFSF
ALLPIGLAMWLSHVLFHLSNGWGTAWSAAQQAAGEMGIGWLGAPRWVASAPLVAPDTMLAIQMLVMDAGVLWSLYLGWRI
AGDYTNRTQDLLKLLAPWAVVAALLYAAGVSVFLQPMQMRGMIHG

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 84120; Mature: 83989

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIEPAIAARSDVIQAALSSWSVPFWATVGVLLAAVLYVRGWKDLAYLRSTLIPPWRLVC
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHH
FLAGLASLWLAIASPLDAFGNFLLTAHMVQHLLMMVVAPPLILLGSPWNLLLRGLPRWAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHCCCHHHH
RDVLGPFLSWDFLKRFGRLVTHPAFCWLAGAVALLGWHIPAAYDRALASPGWHDFEHACL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHH
FGSSLLFWWPVVQPWPAIARWHRWTIPVYLLCGDLAASALAGVLCFSERPLYSAYATVPR
HCCHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LFGMSQLSDQITAGAIMWVFGSSVLLGAAVIVTLRLLDPSLAARKHPLPTWAAPSRRPPF
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCH
DLLRAPVAGAFLRARYGRRALQSCLLMIAVAVIADGFFGHPMAPMNLAGVLPWTYGRAFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHH
LVGLMAAGNFFCMGCPFTLPRELGRRLGLATRYWPRTLRTKWLAVGLLVLFFWAYEKFDF
HHHHHHCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WDKPRLTAWILLGYFVAAFSVDTFFRGASFCKYVCPIGQFNFVASLVSPLEVRIRSRQAC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
TACATHDCARGNQNQRGCELDLFLPRKAGNMDCTFCLDCVKACPHDNIGIVILAPARELA
HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCHHHC
GDPVRSNLGRFSRRPDIAVLALVVVFSAFLSAAAMVASVVASRDRLITHFPAIATLPVTA
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LFFLLALALAPAFLVAGAVRLGRTAARIRRSGRELFCRFSFALLPIGLAMWLSHVLFHLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NGWGTAWSAAQQAAGEMGIGWLGAPRWVASAPLVAPDTMLAIQMLVMDAGVLWSLYLGWR
CCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHE
IAGDYTNRTQDLLKLLAPWAVVAALLYAAGVSVFLQPMQMRGMIHG
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AIEPAIAARSDVIQAALSSWSVPFWATVGVLLAAVLYVRGWKDLAYLRSTLIPPWRLVC
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHH
FLAGLASLWLAIASPLDAFGNFLLTAHMVQHLLMMVVAPPLILLGSPWNLLLRGLPRWAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHCCCHHHH
RDVLGPFLSWDFLKRFGRLVTHPAFCWLAGAVALLGWHIPAAYDRALASPGWHDFEHACL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHH
FGSSLLFWWPVVQPWPAIARWHRWTIPVYLLCGDLAASALAGVLCFSERPLYSAYATVPR
HCCHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LFGMSQLSDQITAGAIMWVFGSSVLLGAAVIVTLRLLDPSLAARKHPLPTWAAPSRRPPF
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCCCH
DLLRAPVAGAFLRARYGRRALQSCLLMIAVAVIADGFFGHPMAPMNLAGVLPWTYGRAFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHHH
LVGLMAAGNFFCMGCPFTLPRELGRRLGLATRYWPRTLRTKWLAVGLLVLFFWAYEKFDF
HHHHHHCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
WDKPRLTAWILLGYFVAAFSVDTFFRGASFCKYVCPIGQFNFVASLVSPLEVRIRSRQAC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
TACATHDCARGNQNQRGCELDLFLPRKAGNMDCTFCLDCVKACPHDNIGIVILAPARELA
HHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCHHHC
GDPVRSNLGRFSRRPDIAVLALVVVFSAFLSAAAMVASVVASRDRLITHFPAIATLPVTA
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LFFLLALALAPAFLVAGAVRLGRTAARIRRSGRELFCRFSFALLPIGLAMWLSHVLFHLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NGWGTAWSAAQQAAGEMGIGWLGAPRWVASAPLVAPDTMLAIQMLVMDAGVLWSLYLGWR
CCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHE
IAGDYTNRTQDLLKLLAPWAVVAALLYAAGVSVFLQPMQMRGMIHG
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA