BacMap

Definition	Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome.
Accession	NC_008536
Length	9,965,640

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The map label for this gene is gdhII [H]

Identifier: 116626614

GI number: 116626614

Start: 9501973

End: 9502740

Strand: Direct

Name: gdhII [H]

Synonym: Acid_7577

Alternate gene names: 116626614

Gene position: 9501973-9502740 (Clockwise)

Preceding gene: 116626613

Following gene: 116626615

Centisome position: 95.35

GC content: 60.81

Gene sequence:

>768_bases
ATGCTTTTGCAAAACAAAGTCGCCATTGTCACCGGTGGAAATAGCGGAATCGGCAAGGCGATCGTGCTCGAACTCGCCAG
GCAAGGCGCCAACATCGTGGTTGACTACATCTCCCATCCGGAAGCGGCCGACGAAGTCGAAAGGCAGGTCGCCCTGCTGG
GCGACAAAGCCATCGGGGTGGAGGCGGACGTAAGCAAGGTGGCGGATCTGGAGCGGCTGGTCGCCGCCGCCGTGAAAGCG
TTCGGCCGGCTGGACATCATGGTGAACAACGCCGGAATCGAGACACGCACGTCCGTGCTTGATACCACCGAAGAGCAATA
CCAGAAGGTACTTGATATTAATCTGAAGAGCGCCTTTTTCGGGACCCAGATCGCAGCCAAACAAATGATCAAGCAGGGCG
GCGGCGGAAAGATCATCAACATCACGTCGGTGCATGAAGATTGGCCCATGCCGGGCAACACTGCGTATTGCTTGTCCAAG
GGCGGTATGCGGATGCTGACGCGTACCGCGGGCGTCGAACTGGCTCATCACAACATCCTGGTGGTTGGGGTCGGCCCCGG
CGCGGTGGCGTCTCCCATCAACCTTGCGACCATGGCGAATCCAGCCGAAATGGCAAAGCTGAACGCGGCCATACCGCTGG
GACGAATGGCGCAGCCGGCGGAGATCGCCAGTGTGGTGGCGCTGCTCGCAGGGGGCGGCGCGAACTACATCACCGCCACT
ACCGTGTTCGCCGATGGCGGCCTCATGCAGAACAGCCCGGGGCTGTGA

Upstream 100 bases:

>100_bases
AGGCGACATGGCTCGCATCGACTGGGATGAAGGCGCCGGGGAGAGCAGCTCCAGTAGCGCGCCCGCCGTAAAGTCCGCCA
GGTAGGTCGTAGGAGCTTGA

Downstream 100 bases:

>100_bases
TCCATGTCCGTCGATTACGACGTCATCATTATTGGGAGCGGCGCCGGAGGCGGTACCCTGGCCCGCCAACTGGCCCCGAC
CGGAAAGCGGATCCTGATTC

Product: glucose 1-dehydrogenase

Products: NA

Alternate protein names: GLCDH-II [H]

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MLLQNKVAIVTGGNSGIGKAIVLELARQGANIVVDYISHPEAADEVERQVALLGDKAIGVEADVSKVADLERLVAAAVKA
FGRLDIMVNNAGIETRTSVLDTTEEQYQKVLDINLKSAFFGTQIAAKQMIKQGGGGKIINITSVHEDWPMPGNTAYCLSK
GGMRMLTRTAGVELAHHNILVVGVGPGAVASPINLATMANPAEMAKLNAAIPLGRMAQPAEIASVVALLAGGGANYITAT
TVFADGGLMQNSPGL

Sequences:

>Translated_255_residues
MLLQNKVAIVTGGNSGIGKAIVLELARQGANIVVDYISHPEAADEVERQVALLGDKAIGVEADVSKVADLERLVAAAVKA
FGRLDIMVNNAGIETRTSVLDTTEEQYQKVLDINLKSAFFGTQIAAKQMIKQGGGGKIINITSVHEDWPMPGNTAYCLSK
GGMRMLTRTAGVELAHHNILVVGVGPGAVASPINLATMANPAEMAKLNAAIPLGRMAQPAEIASVVALLAGGGANYITAT
TVFADGGLMQNSPGL
>Mature_255_residues
MLLQNKVAIVTGGNSGIGKAIVLELARQGANIVVDYISHPEAADEVERQVALLGDKAIGVEADVSKVADLERLVAAAVKA
FGRLDIMVNNAGIETRTSVLDTTEEQYQKVLDINLKSAFFGTQIAAKQMIKQGGGGKIINITSVHEDWPMPGNTAYCLSK
GGMRMLTRTAGVELAHHNILVVGVGPGAVASPINLATMANPAEMAKLNAAIPLGRMAQPAEIASVVALLAGGGANYITAT
TVFADGGLMQNSPGL

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=35.7429718875502, Blast_Score=135, Evalue=5e-32,
Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=35.15625, Blast_Score=123, Evalue=1e-28,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=31.3492063492063, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=27.710843373494, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=39.8907103825137, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=28.1746031746032, Blast_Score=101, Evalue=8e-22,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=30.8943089430894, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI10190704, Length=259, Percent_Identity=28.957528957529, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=31.1740890688259, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI4758504, Length=233, Percent_Identity=33.9055793991416, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=34.8717948717949, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI31542939, Length=204, Percent_Identity=34.3137254901961, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI224922801, Length=179, Percent_Identity=36.3128491620112, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI59889578, Length=196, Percent_Identity=29.5918367346939, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=30.1020408163265, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI83715985, Length=233, Percent_Identity=32.618025751073, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI4504505, Length=196, Percent_Identity=30.1020408163265, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI40254986, Length=170, Percent_Identity=31.7647058823529, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI20149619, Length=235, Percent_Identity=26.3829787234043, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI302344755, Length=106, Percent_Identity=39.622641509434, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI66933014, Length=253, Percent_Identity=28.4584980237154, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI209862901, Length=214, Percent_Identity=26.6355140186916, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI19923983, Length=214, Percent_Identity=26.6355140186916, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI4503817, Length=192, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1788459, Length=252, Percent_Identity=40.4761904761905, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=36.4372469635627, Blast_Score=150, Evalue=6e-38,
Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=35.0393700787402, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=34.1269841269841, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=29.9595141700405, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789378, Length=239, Percent_Identity=32.2175732217573, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=34.136546184739, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=30.8, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=31.0483870967742, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=30.4, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=28.90625, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=25.8823529411765, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=26.0869565217391, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788891, Length=260, Percent_Identity=27.3076923076923, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=31.1538461538462, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=31.8548387096774, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=31.4176245210728, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=34.2741935483871, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=31.0483870967742, Blast_Score=111, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=31.9391634980989, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=32.5757575757576, Blast_Score=110, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=31.203007518797, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=30.4, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=28.9156626506024, Blast_Score=104, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=28.6792452830189, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=29.6153846153846, Blast_Score=104, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=30.7984790874525, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=28.6290322580645, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=30, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=31.4393939393939, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=30.5660377358491, Blast_Score=98, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=31.0344827586207, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=28.8973384030418, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=30.3370786516854, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=26.8199233716475, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI71982365, Length=194, Percent_Identity=31.9587628865979, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=29.2134831460674, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=25.9541984732824, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17568967, Length=198, Percent_Identity=30.8080808080808, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17564282, Length=160, Percent_Identity=30, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=275, Percent_Identity=26.5454545454545, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17536025, Length=252, Percent_Identity=25.7936507936508, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=25, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17558628, Length=198, Percent_Identity=31.3131313131313, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71997402, Length=187, Percent_Identity=27.807486631016, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=160, Percent_Identity=27.5, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=169, Percent_Identity=28.4023668639053, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17561272, Length=255, Percent_Identity=25.8823529411765, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=157, Percent_Identity=28.0254777070064, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=141, Percent_Identity=27.6595744680851, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71997099, Length=232, Percent_Identity=26.7241379310345, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=192, Percent_Identity=29.6875, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6324126, Length=254, Percent_Identity=26.3779527559055, Blast_Score=72, Evalue=7e-14,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=31.1284046692607, Blast_Score=117, Evalue=7e-27,
Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=31.5175097276265, Blast_Score=117, Evalue=9e-27,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=34.8, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24644339, Length=266, Percent_Identity=30.4511278195489, Blast_Score=114, Evalue=9e-26,
Organism=Drosophila melanogaster, GI23397609, Length=259, Percent_Identity=32.8185328185328, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=29.718875502008, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=35.2331606217617, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=27.3469387755102, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI17737361, Length=237, Percent_Identity=29.957805907173, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24649181, Length=173, Percent_Identity=31.2138728323699, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21357673, Length=197, Percent_Identity=31.9796954314721, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24644337, Length=215, Percent_Identity=26.9767441860465, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21355631, Length=169, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21358495, Length=200, Percent_Identity=27.5, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28574402, Length=199, Percent_Identity=32.1608040201005, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24584744, Length=199, Percent_Identity=32.1608040201005, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24580925, Length=191, Percent_Identity=25.130890052356, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24584748, Length=196, Percent_Identity=33.6734693877551, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI161076933, Length=196, Percent_Identity=33.6734693877551, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24584752, Length=192, Percent_Identity=30.2083333333333, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24640492, Length=159, Percent_Identity=28.3018867924528, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 26425; Mature: 26425

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLQNKVAIVTGGNSGIGKAIVLELARQGANIVVDYISHPEAADEVERQVALLGDKAIGV
CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCC
EADVSKVADLERLVAAAVKAFGRLDIMVNNAGIETRTSVLDTTEEQYQKVLDINLKSAFF
CCHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHCCCHHHHHHHHHCCHHHHHH
GTQIAAKQMIKQGGGGKIINITSVHEDWPMPGNTAYCLSKGGMRMLTRTAGVELAHHNIL
HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCEEHHHHHCCEEEECCEE
VVGVGPGAVASPINLATMANPAEMAKLNAAIPLGRMAQPAEIASVVALLAGGGANYITAT
EEECCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
TVFADGGLMQNSPGL
EEEECCCCCCCCCCC
>Mature Secondary Structure
MLLQNKVAIVTGGNSGIGKAIVLELARQGANIVVDYISHPEAADEVERQVALLGDKAIGV
CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCC
EADVSKVADLERLVAAAVKAFGRLDIMVNNAGIETRTSVLDTTEEQYQKVLDINLKSAFF
CCHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCHHHHHHCCCHHHHHHHHHCCHHHHHH
GTQIAAKQMIKQGGGGKIINITSVHEDWPMPGNTAYCLSKGGMRMLTRTAGVELAHHNIL
HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCEEHHHHHCCEEEECCEE
VVGVGPGAVASPINLATMANPAEMAKLNAAIPLGRMAQPAEIASVVALLAGGGANYITAT
EEECCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
TVFADGGLMQNSPGL
EEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA