The gene/protein map for NC_008536 is currently unavailable.
Definition Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome.
Accession NC_008536
Length 9,965,640

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The map label for this gene is rbpE [H]

Identifier: 116626576

GI number: 116626576

Start: 9447153

End: 9447503

Strand: Direct

Name: rbpE [H]

Synonym: Acid_7539

Alternate gene names: 116626576

Gene position: 9447153-9447503 (Clockwise)

Preceding gene: 116626575

Following gene: 116626577

Centisome position: 94.8

GC content: 63.53

Gene sequence:

>351_bases
ATGAAAAACATCTTTGTAGGCAATTTGGATTTCGCAGCAACTGAATCTTCCATCCGTAGCCTCTTCGAGCCCTACGGCAG
TGTGGACCGTGTAAACCTGGTAACTGACCGCGACACCGGCCGTTCGCGTGGTTTCGCCTTCGTTGAAATGACGGATGCGG
CGGAAGCCGATCGCGCGATCGCGGCCCTGAATGGCCACGAACTCGACGGTCGTGCGCTCAATATCAATGAGGCGCGTCCC
AAGCCCCAGGGCGGCGGCGGTGGTGGCCGTGGCTTTGGCGGAGGTGGCGGCGGTGGCCGTCCCGGCGGCGGTGGCGGTGG
TCGTCCTCCGCGGCGCGAACCGCGCTGGTAA

Upstream 100 bases:

>100_bases
CTGCTATACTTAAGATGCCTTTTGAGAGTCCTGCAACAACCTGGCTGAGAATTCCAAATCTTGCCTCGTCTAGCCCGCAC
AATCAAAGACATATGACGAT

Downstream 100 bases:

>100_bases
TAGCTGAAAACGTCCGGCGGCCGGTTTGCGAAAACCGCCGCCGGCTATCAGGGAGCCTGACGGTTCCGCGAATGGCGCGC
AAATCGCCTGGGCAGGGAGG

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MKNIFVGNLDFAATESSIRSLFEPYGSVDRVNLVTDRDTGRSRGFAFVEMTDAAEADRAIAALNGHELDGRALNINEARP
KPQGGGGGGRGFGGGGGGGRPGGGGGGRPPRREPRW

Sequences:

>Translated_116_residues
MKNIFVGNLDFAATESSIRSLFEPYGSVDRVNLVTDRDTGRSRGFAFVEMTDAAEADRAIAALNGHELDGRALNINEARP
KPQGGGGGGRGFGGGGGGGRPGGGGGGRPPRREPRW
>Mature_116_residues
MKNIFVGNLDFAATESSIRSLFEPYGSVDRVNLVTDRDTGRSRGFAFVEMTDAAEADRAIAALNGHELDGRALNINEARP
KPQGGGGGGRGFGGGGGGGRPGGGGGGRPPRREPRW

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI116734696, Length=102, Percent_Identity=38.2352941176471, Blast_Score=76, Evalue=7e-15,
Organism=Homo sapiens, GI116734694, Length=102, Percent_Identity=38.2352941176471, Blast_Score=76, Evalue=8e-15,
Organism=Homo sapiens, GI116734698, Length=102, Percent_Identity=38.2352941176471, Blast_Score=75, Evalue=8e-15,
Organism=Homo sapiens, GI14149675, Length=78, Percent_Identity=41.025641025641, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI4757926, Length=72, Percent_Identity=40.2777777777778, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI35493811, Length=72, Percent_Identity=40.2777777777778, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI4557493, Length=78, Percent_Identity=39.7435897435897, Blast_Score=70, Evalue=4e-13,
Organism=Homo sapiens, GI4502847, Length=75, Percent_Identity=41.3333333333333, Blast_Score=70, Evalue=5e-13,
Organism=Homo sapiens, GI221139802, Length=76, Percent_Identity=44.7368421052632, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI34577107, Length=78, Percent_Identity=43.5897435897436, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI34577105, Length=76, Percent_Identity=44.7368421052632, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI5803137, Length=75, Percent_Identity=40, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI242117971, Length=76, Percent_Identity=38.1578947368421, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI21361809, Length=76, Percent_Identity=38.1578947368421, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI56699409, Length=76, Percent_Identity=38.1578947368421, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI47271443, Length=79, Percent_Identity=41.7721518987342, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI223890219, Length=77, Percent_Identity=36.3636363636364, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI153252068, Length=76, Percent_Identity=38.1578947368421, Blast_Score=63, Evalue=6e-11,
Organism=Homo sapiens, GI221316769, Length=73, Percent_Identity=43.8356164383562, Blast_Score=62, Evalue=7e-11,
Organism=Homo sapiens, GI49472822, Length=78, Percent_Identity=39.7435897435897, Blast_Score=62, Evalue=9e-11,
Organism=Homo sapiens, GI221316767, Length=73, Percent_Identity=43.8356164383562, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17553656, Length=100, Percent_Identity=37, Blast_Score=76, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17508587, Length=78, Percent_Identity=46.1538461538462, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=75, Percent_Identity=42.6666666666667, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17508567, Length=75, Percent_Identity=46.6666666666667, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25152876, Length=100, Percent_Identity=34, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=90, Percent_Identity=33.3333333333333, Blast_Score=61, Evalue=4e-11,
Organism=Drosophila melanogaster, GI19920866, Length=72, Percent_Identity=41.6666666666667, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24582412, Length=72, Percent_Identity=41.6666666666667, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24582417, Length=72, Percent_Identity=41.6666666666667, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI45550943, Length=72, Percent_Identity=41.6666666666667, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24582419, Length=72, Percent_Identity=41.6666666666667, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24582423, Length=72, Percent_Identity=41.6666666666667, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24582421, Length=72, Percent_Identity=41.6666666666667, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI17137710, Length=78, Percent_Identity=39.7435897435897, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24650840, Length=81, Percent_Identity=38.2716049382716, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24650838, Length=81, Percent_Identity=38.2716049382716, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24650836, Length=81, Percent_Identity=38.2716049382716, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17738267, Length=81, Percent_Identity=38.2716049382716, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24650831, Length=81, Percent_Identity=38.2716049382716, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24650833, Length=81, Percent_Identity=38.2716049382716, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 12027; Mature: 12027

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MKNIFVGNLDFAATESSIRSLFEPYGSVDRVNLVTDRDTGRSRGFAFVEMTDAAEADRAI
CCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCEE
AALNGHELDGRALNINEARPKPQGGGGGGRGFGGGGGGGRPGGGGGGRPPRREPRW
EECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNIFVGNLDFAATESSIRSLFEPYGSVDRVNLVTDRDTGRSRGFAFVEMTDAAEADRAI
CCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCEE
AALNGHELDGRALNINEARPKPQGGGGGGRGFGGGGGGGRPGGGGGGRPPRREPRW
EECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]