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The map label for this gene is ycdQ [C]

Identifier: 116626476

GI number: 116626476

Start: 9331972

End: 9332646

Strand: Direct

Name: ycdQ [C]

Synonym: Acid_7439

Alternate gene names: 116626476

Gene position: 9331972-9332646 (Clockwise)

Preceding gene: 116626474

Following gene: 116626477

Centisome position: 93.64

GC content: 57.48

Gene sequence:

>675_bases
ATGTATAAGTCCCTTAGGATCACGGTGATCATCCCCTGCCTCAACGAAGAACAGGGGATCGAGAAAGTTCTCCTCGCCAT
GCCGGAATTCGTGGATGAGGTGATCGTTGTGGACAATAACTCCACCGATCGCACCAGCGAAGTGGCAATGTCGCTCGGAG
CCAAAGTAGTGCGCGAAGAAGTGCGCGGTTATGGGCGCGCCTACAAGCGCGGCTTCGCCGACGCCACCGGCGACCTGATC
ATCACGCTGGATGGCGACCAGAGTTACCCGGTGGACGCGCTTTCCTACCTCATCGAAGCCTTTCTTCACCACGAGGTCGA
TTTTCTGAATGCTTCGCGTTTTCCCGTGCGCGACCGGCGCGCCATGAGCCTCAAGCATAAGTTCGGGAACCTGATCCTCT
CGCTGGCGATGTCGGTGCTCTTCTTCCGCTGGGTGCGGGATTCGCAGTCGGGTATGTGGGTCTTCCGCCGCGAGATCCTC
AAGGAGATGAAGATCGAGAGCGACGGCATGGCCTTCAGCGAAGAGATCAAAATCGAAGCCCTGCTCAGTCCGCGCATCCG
CTTCGGAGAAATCTCGATCATGTACACCTCACGCCTCGGCGAGATTAAGCTGAACCCGTGGCGCGATGGTTTCCACAACC
TGGCATTCCTGCTGAAGAAGCGCTTCTTGCGATGA

Upstream 100 bases:

>100_bases
AGCCGCTTCATACAACTCATGATAACCAGACGCGCGGCGCCCCGAAAAAGTCGAAGGCCGGCGTGGGATACGCGCTGGCC
GTTCGCGGTGCGGGGGATGC

Downstream 100 bases:

>100_bases
ACATCAGCGCCATCGTGCCGGTGTGGAACGGCCGCGATCTGCTGGCCGGCTTACTGGCGTCGCTGGATGCACAGACGCTG
CCCGTTGGCGAACTCATCGT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MYKSLRITVIIPCLNEEQGIEKVLLAMPEFVDEVIVVDNNSTDRTSEVAMSLGAKVVREEVRGYGRAYKRGFADATGDLI
ITLDGDQSYPVDALSYLIEAFLHHEVDFLNASRFPVRDRRAMSLKHKFGNLILSLAMSVLFFRWVRDSQSGMWVFRREIL
KEMKIESDGMAFSEEIKIEALLSPRIRFGEISIMYTSRLGEIKLNPWRDGFHNLAFLLKKRFLR

Sequences:

>Translated_224_residues
MYKSLRITVIIPCLNEEQGIEKVLLAMPEFVDEVIVVDNNSTDRTSEVAMSLGAKVVREEVRGYGRAYKRGFADATGDLI
ITLDGDQSYPVDALSYLIEAFLHHEVDFLNASRFPVRDRRAMSLKHKFGNLILSLAMSVLFFRWVRDSQSGMWVFRREIL
KEMKIESDGMAFSEEIKIEALLSPRIRFGEISIMYTSRLGEIKLNPWRDGFHNLAFLLKKRFLR
>Mature_224_residues
MYKSLRITVIIPCLNEEQGIEKVLLAMPEFVDEVIVVDNNSTDRTSEVAMSLGAKVVREEVRGYGRAYKRGFADATGDLI
ITLDGDQSYPVDALSYLIEAFLHHEVDFLNASRFPVRDRRAMSLKHKFGNLILSLAMSVLFFRWVRDSQSGMWVFRREIL
KEMKIESDGMAFSEEIKIEALLSPRIRFGEISIMYTSRLGEIKLNPWRDGFHNLAFLLKKRFLR

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787259, Length=204, Percent_Identity=27.4509803921569, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 25859; Mature: 25859

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKSLRITVIIPCLNEEQGIEKVLLAMPEFVDEVIVVDNNSTDRTSEVAMSLGAKVVREE
CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHH
VRGYGRAYKRGFADATGDLIITLDGDQSYPVDALSYLIEAFLHHEVDFLNASRFPVRDRR
HHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
AMSLKHKFGNLILSLAMSVLFFRWVRDSQSGMWVFRREILKEMKIESDGMAFSEEIKIEA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEHHHEEEEE
LLSPRIRFGEISIMYTSRLGEIKLNPWRDGFHNLAFLLKKRFLR
EECCCEEECEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYKSLRITVIIPCLNEEQGIEKVLLAMPEFVDEVIVVDNNSTDRTSEVAMSLGAKVVREE
CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHH
VRGYGRAYKRGFADATGDLIITLDGDQSYPVDALSYLIEAFLHHEVDFLNASRFPVRDRR
HHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
AMSLKHKFGNLILSLAMSVLFFRWVRDSQSGMWVFRREILKEMKIESDGMAFSEEIKIEA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEHHHEEEEE
LLSPRIRFGEISIMYTSRLGEIKLNPWRDGFHNLAFLLKKRFLR
EECCCEEECEEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]