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The map label for this gene is cspLA [H]

Identifier: 116626278

GI number: 116626278

Start: 9089374

End: 9089577

Strand: Direct

Name: cspLA [H]

Synonym: Acid_7238

Alternate gene names: 116626278

Gene position: 9089374-9089577 (Clockwise)

Preceding gene: 116626276

Following gene: 116626279

Centisome position: 91.21

GC content: 54.9

Gene sequence:

>204_bases
ATGAAAGAAAAAGGTACAGTGAAGTGGTTTAACGCGGCCAAAGGCTACGGCTTTATCCAGCGTGAGAATGGCGAAGACGT
GTTCGTGCACTTCTCCGCGATTCAGACGGAAGGCTACCGCACCCTGGACGAAGGCTCCAGCGTGGAGTTTGAAGTGACGA
AGGGTCCGAAGGGTTTGCAGGCGACCAACGTTACGGCGGCCTAA

Upstream 100 bases:

>100_bases
GCGTGAGTCCATCCGCACCCCCTTTTTTCGTTTTTCGGGGCGAAATCGCTGGGTGAATGCAAATCAGGAACAGCAAAGAG
TAAAGAAGGAAATAAGGCAG

Downstream 100 bases:

>100_bases
TTTAAGTCGCGGGCCGGTTCAGGTACTGTTCGGTACTGGATCCGGCCCGCCCATTTCACTATTTGGAGGTCTATGAGCAA
AGAGGACAGCATTGAAGTAA

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: CspL [H]

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MKEKGTVKWFNAAKGYGFIQRENGEDVFVHFSAIQTEGYRTLDEGSSVEFEVTKGPKGLQATNVTAA

Sequences:

>Translated_67_residues
MKEKGTVKWFNAAKGYGFIQRENGEDVFVHFSAIQTEGYRTLDEGSSVEFEVTKGPKGLQATNVTAA
>Mature_67_residues
MKEKGTVKWFNAAKGYGFIQRENGEDVFVHFSAIQTEGYRTLDEGSSVEFEVTKGPKGLQATNVTAA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI156415990, Length=68, Percent_Identity=51.4705882352941, Blast_Score=66, Evalue=5e-12,
Organism=Homo sapiens, GI224586884, Length=66, Percent_Identity=51.5151515151515, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI34098946, Length=66, Percent_Identity=51.5151515151515, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI224586882, Length=66, Percent_Identity=51.5151515151515, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=65.1515151515152, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=60.9375, Blast_Score=82, Evalue=4e-18,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=59.0909090909091, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=62.1212121212121, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=59.375, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=54.5454545454545, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=54.6875, Blast_Score=73, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17533635, Length=69, Percent_Identity=47.8260869565217, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=49.2063492063492, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24663131, Length=68, Percent_Identity=51.4705882352941, Blast_Score=62, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7372; Mature: 7372

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKGTVKWFNAAKGYGFIQRENGEDVFVHFSAIQTEGYRTLDEGSSVEFEVTKGPKGLQ
CCCCCCEEEEECCCCCEEEEECCCCEEEEEEEEEECCCCEECCCCCCEEEEECCCCCCCE
ATNVTAA
ECCEECC
>Mature Secondary Structure
MKEKGTVKWFNAAKGYGFIQRENGEDVFVHFSAIQTEGYRTLDEGSSVEFEVTKGPKGLQ
CCCCCCEEEEECCCCCEEEEECCCCEEEEEEEEEECCCCEECCCCCCEEEEECCCCCCCE
ATNVTAA
ECCEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669; 9439003 [H]