| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is yagR [C]
Identifier: 116626259
GI number: 116626259
Start: 9068942
End: 9070942
Strand: Direct
Name: yagR [C]
Synonym: Acid_7219
Alternate gene names: 116626259
Gene position: 9068942-9070942 (Clockwise)
Preceding gene: 116626258
Following gene: 116626260
Centisome position: 91.0
GC content: 65.62
Gene sequence:
>2001_bases ATGAGGCGGCGCGATTTCTTCTCCGTGATGGGCGGCGGCATCGTCGTGCTTTTGGAAGACGATATGCTCGCGCAGGAGAC CGGCGGTCCGCGCCGCAACCCGTCGGAGGCTGTGCCTGCCGAGATCGGAGCCTGGCTCCACATCGGCGAAAGCGGCGACA TCACGGTCTACACGGGCAAAGTCGAAGTCGGGCAGAATGCGCGCACCTCGCTGACCCAGGCCGTAGTCGAGGAACTCCAC GCGCCGGTATCGTCGGTCCACATGGTCATGGCGGACACCGACCTGACCCCGTTCGATATCGGGACCGTGGGCAGCATGAC CACGCCGCGCATGTGGCCGCAGATCCGCAAGGCCGCGGCCGCCGCGCGCGAGATGCTGCTCGATCTGGCGGCGCAGAAGT GGAGCGTCGACCGCGCCACGTTGAAAATCGCCGACGGCAAAGTATCCGCCGGCACGCGGTCGGCGGGCTTCGGCGAATTG ACGCGCGGGGAACGTTTGACGCGCACCATCCCGGCGAGCGTCGCGCTGGCTCCCGCGGGCGAATGGAAGTCGGCGGGTAC CTCGCTGCCCAAGGTCAACGGGCATGCGATCGTCACCGGCGCCCACAAATACACCTACGACATGAAGCGGCAGGGCATGC TGTACAGCAAGGTGCTGTATCCGCCGCAATTCGGCGCCACGCTGGTATCGCTGGATGCGTCGCTGGCGGAGGCGATGCCC GGAGTCCAGGTGGTTCACGAGGGCAACTTCGTTGCTGTCGCGGCGCCCGAGCCGGATCTCGCGGCCAAAGCAGTCGCCGT CCTGAAGGCCAACTGGAAGCCGGTAACGGCGGAGGCGGACAACCGCACCGTCTTCCAATATTTCAAGAAGACGGCGCAGG GCGGCGCCGCGGCGAATCCGACGCTGACGCCCTACACGATTGCCTACATCGCGCACGTGCCGCTGGAGCCCCGTTCCGCG CTCGCGCAATGGGACGGCGACAAACTCACGGTGTGGACCGGGTCGCAGCGGCCCTTCGGAGTGCGCAGCGAACTCGCGCA GGCCTTCCAGGTATCGGAGGACAAGGTGCGCGTGATCGTGCCCGACACCGGGTCGGGCTACGGCGGCAAGCACAATGGCG ATGCCGCGGTGGAAGCGGCACGGATCGCGAAAGCGCTCAACAAACCCGTCAAACGCAACTGGACTCGCGACGAAGAGATG ACCTGGGCGTACTTCCGTCCTGGCGGCGCGATCGACGTCGCGGGCAAGGCCGCTCCGGATGGGACGATCACGGAATGGGA GTTCCACAATTACAACTCCGGCCCCTCGGGACTCCAATCGCCCTACGAGATCGCGGGCAGGAGAGAGCAATACCACCAAT CGAAATCGCCGCTGCGGCAGGGTTCGTACCGGGGACTCGCGGCGACGGCCAACCACTTCGTGCGTGAGAGCTACATGGAC GAACTGGCCGAGTCGGTGAAGATGGATCCGCTCGAGTTCCGGTTGAAGAATGCGAGGGACGAGCGGCTGCGCAATGTGAT CGTCGCTGCGTCCGAGAAGTTCGGTTGGAAGCAGCGCAAGAAGGCGGCGGGCCGCGGTTTCGGAATTGCCGCGGGCTTCG AGAAGGGCGGCTATGTCGCGACCTGCGCCGAGGTCAGCGTGGATGACAAGACCGGAGCGGTCAAGGTGCTGCGCGCGGTG GTCGCCTTCGAATGCGGCGCCGTGGTGAATCCCGAGCACTTGAGAAATCAGGTGGAAGGCGCGATCGTGATGGGGTTGGG CGGCGCGTTGTTCGAGGAGATTCAGTTCGCCGAGGGCAGGATCCTCAACAACCGGCTCGCCCGCTACCGCGTACCGCGAT TTGCCGATACGCCGGTGATCGAAAGCGTGCTGCTGGATCGCAAAGACCTGGCATCGGCGGGCGCGGGCGAGACGCCGATC GTCGGGATCGCGCCGGCGATCGGTAACGCGATCTTCGACGCGAACGGGAAGCGCATCCGGCGATTGCCGTTGATGGCGTA A
Upstream 100 bases:
>100_bases GCGAGATCGCGAGCGGCATGAACGGCCACATCTGTCGCTGTGGGACCTATCCGCGGGTGGTGCGCGCGATTCGTTCCGCG GCGGGGCAAGGAGGCCGCGC
Downstream 100 bases:
>100_bases ACTAAGCACATCGAGGTAAATAATTGAGGGGAAGCCTGCTGTTCCTGTTTGCGGCAAGCTGTGCGTTTGGGCAGACGAGT GATTCCTACGCCGGCTCGGC
Product: aldehyde oxidase and xanthine dehydrogenase molybdopterin-binding protein
Products: NA
Alternate protein names: ALDH [H]
Number of amino acids: Translated: 666; Mature: 666
Protein sequence:
>666_residues MRRRDFFSVMGGGIVVLLEDDMLAQETGGPRRNPSEAVPAEIGAWLHIGESGDITVYTGKVEVGQNARTSLTQAVVEELH APVSSVHMVMADTDLTPFDIGTVGSMTTPRMWPQIRKAAAAAREMLLDLAAQKWSVDRATLKIADGKVSAGTRSAGFGEL TRGERLTRTIPASVALAPAGEWKSAGTSLPKVNGHAIVTGAHKYTYDMKRQGMLYSKVLYPPQFGATLVSLDASLAEAMP GVQVVHEGNFVAVAAPEPDLAAKAVAVLKANWKPVTAEADNRTVFQYFKKTAQGGAAANPTLTPYTIAYIAHVPLEPRSA LAQWDGDKLTVWTGSQRPFGVRSELAQAFQVSEDKVRVIVPDTGSGYGGKHNGDAAVEAARIAKALNKPVKRNWTRDEEM TWAYFRPGGAIDVAGKAAPDGTITEWEFHNYNSGPSGLQSPYEIAGRREQYHQSKSPLRQGSYRGLAATANHFVRESYMD ELAESVKMDPLEFRLKNARDERLRNVIVAASEKFGWKQRKKAAGRGFGIAAGFEKGGYVATCAEVSVDDKTGAVKVLRAV VAFECGAVVNPEHLRNQVEGAIVMGLGGALFEEIQFAEGRILNNRLARYRVPRFADTPVIESVLLDRKDLASAGAGETPI VGIAPAIGNAIFDANGKRIRRLPLMA
Sequences:
>Translated_666_residues MRRRDFFSVMGGGIVVLLEDDMLAQETGGPRRNPSEAVPAEIGAWLHIGESGDITVYTGKVEVGQNARTSLTQAVVEELH APVSSVHMVMADTDLTPFDIGTVGSMTTPRMWPQIRKAAAAAREMLLDLAAQKWSVDRATLKIADGKVSAGTRSAGFGEL TRGERLTRTIPASVALAPAGEWKSAGTSLPKVNGHAIVTGAHKYTYDMKRQGMLYSKVLYPPQFGATLVSLDASLAEAMP GVQVVHEGNFVAVAAPEPDLAAKAVAVLKANWKPVTAEADNRTVFQYFKKTAQGGAAANPTLTPYTIAYIAHVPLEPRSA LAQWDGDKLTVWTGSQRPFGVRSELAQAFQVSEDKVRVIVPDTGSGYGGKHNGDAAVEAARIAKALNKPVKRNWTRDEEM TWAYFRPGGAIDVAGKAAPDGTITEWEFHNYNSGPSGLQSPYEIAGRREQYHQSKSPLRQGSYRGLAATANHFVRESYMD ELAESVKMDPLEFRLKNARDERLRNVIVAASEKFGWKQRKKAAGRGFGIAAGFEKGGYVATCAEVSVDDKTGAVKVLRAV VAFECGAVVNPEHLRNQVEGAIVMGLGGALFEEIQFAEGRILNNRLARYRVPRFADTPVIESVLLDRKDLASAGAGETPI VGIAPAIGNAIFDANGKRIRRLPLMA >Mature_666_residues MRRRDFFSVMGGGIVVLLEDDMLAQETGGPRRNPSEAVPAEIGAWLHIGESGDITVYTGKVEVGQNARTSLTQAVVEELH APVSSVHMVMADTDLTPFDIGTVGSMTTPRMWPQIRKAAAAAREMLLDLAAQKWSVDRATLKIADGKVSAGTRSAGFGEL TRGERLTRTIPASVALAPAGEWKSAGTSLPKVNGHAIVTGAHKYTYDMKRQGMLYSKVLYPPQFGATLVSLDASLAEAMP GVQVVHEGNFVAVAAPEPDLAAKAVAVLKANWKPVTAEADNRTVFQYFKKTAQGGAAANPTLTPYTIAYIAHVPLEPRSA LAQWDGDKLTVWTGSQRPFGVRSELAQAFQVSEDKVRVIVPDTGSGYGGKHNGDAAVEAARIAKALNKPVKRNWTRDEEM TWAYFRPGGAIDVAGKAAPDGTITEWEFHNYNSGPSGLQSPYEIAGRREQYHQSKSPLRQGSYRGLAATANHFVRESYMD ELAESVKMDPLEFRLKNARDERLRNVIVAASEKFGWKQRKKAAGRGFGIAAGFEKGGYVATCAEVSVDDKTGAVKVLRAV VAFECGAVVNPEHLRNQVEGAIVMGLGGALFEEIQFAEGRILNNRLARYRVPRFADTPVIESVLLDRKDLASAGAGETPI VGIAPAIGNAIFDANGKRIRRLPLMA
Specific function: Unknown
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786478, Length=146, Percent_Identity=34.9315068493151, Blast_Score=92, Evalue=9e-20, Organism=Escherichia coli, GI1789230, Length=386, Percent_Identity=24.0932642487047, Blast_Score=76, Evalue=5e-15, Organism=Escherichia coli, GI1789246, Length=163, Percent_Identity=33.1288343558282, Blast_Score=70, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012368 - InterPro: IPR006311 [H]
Pfam domain/function: PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.2.99.3 [H]
Molecular weight: Translated: 71807; Mature: 71807
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRRDFFSVMGGGIVVLLEDDMLAQETGGPRRNPSEAVPAEIGAWLHIGESGDITVYTGK CCCHHHHHHCCCCEEEEEECCHHHHHCCCCCCCCCCCCCHHCCCEEEECCCCCEEEEEEE VEVGQNARTSLTQAVVEELHAPVSSVHMVMADTDLTPFDIGTVGSMTTPRMWPQIRKAAA EEECCCHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH AAREMLLDLAAQKWSVDRATLKIADGKVSAGTRSAGFGELTRGERLTRTIPASVALAPAG HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCC EWKSAGTSLPKVNGHAIVTGAHKYTYDMKRQGMLYSKVLYPPQFGATLVSLDASLAEAMP CCCCCCCCCCCCCCCEEEECCHHEEEHHHHCCCCHHHEECCCCCCCEEEEHHHHHHHHCC GVQVVHEGNFVAVAAPEPDLAAKAVAVLKANWKPVTAEADNRTVFQYFKKTAQGGAAANP CEEEEECCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCC TLTPYTIAYIAHVPLEPRSALAQWDGDKLTVWTGSQRPFGVRSELAQAFQVSEDKVRVIV CCCCEEEEEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEE PDTGSGYGGKHNGDAAVEAARIAKALNKPVKRNWTRDEEMTWAYFRPGGAIDVAGKAAPD CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCCCEEECCCCCCC GTITEWEFHNYNSGPSGLQSPYEIAGRREQYHQSKSPLRQGSYRGLAATANHFVRESYMD CCEEEEEECCCCCCCCCCCCHHHHHCCHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHH ELAESVKMDPLEFRLKNARDERLRNVIVAASEKFGWKQRKKAAGRGFGIAAGFEKGGYVA HHHHHHCCCHHHHHHHCCHHHHHHHHHEECCHHCCHHHHHHHCCCCCEEEECCCCCCEEE TCAEVSVDDKTGAVKVLRAVVAFECGAVVNPEHLRNQVEGAIVMGLGGALFEEIQFAEGR EEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEECCHHHHHHHHHHCCC ILNNRLARYRVPRFADTPVIESVLLDRKDLASAGAGETPIVGIAPAIGNAIFDANGKRIR HHHHHHHHHCCCCCCCCHHHHHHHHCHHHHHCCCCCCCCEEEECHHHCCEEECCCCCEEE RLPLMA CCCCCC >Mature Secondary Structure MRRRDFFSVMGGGIVVLLEDDMLAQETGGPRRNPSEAVPAEIGAWLHIGESGDITVYTGK CCCHHHHHHCCCCEEEEEECCHHHHHCCCCCCCCCCCCCHHCCCEEEECCCCCEEEEEEE VEVGQNARTSLTQAVVEELHAPVSSVHMVMADTDLTPFDIGTVGSMTTPRMWPQIRKAAA EEECCCHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH AAREMLLDLAAQKWSVDRATLKIADGKVSAGTRSAGFGELTRGERLTRTIPASVALAPAG HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEECCCC EWKSAGTSLPKVNGHAIVTGAHKYTYDMKRQGMLYSKVLYPPQFGATLVSLDASLAEAMP CCCCCCCCCCCCCCCEEEECCHHEEEHHHHCCCCHHHEECCCCCCCEEEEHHHHHHHHCC GVQVVHEGNFVAVAAPEPDLAAKAVAVLKANWKPVTAEADNRTVFQYFKKTAQGGAAANP CEEEEECCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCC TLTPYTIAYIAHVPLEPRSALAQWDGDKLTVWTGSQRPFGVRSELAQAFQVSEDKVRVIV CCCCEEEEEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEE PDTGSGYGGKHNGDAAVEAARIAKALNKPVKRNWTRDEEMTWAYFRPGGAIDVAGKAAPD CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEECCCCCEEECCCCCCC GTITEWEFHNYNSGPSGLQSPYEIAGRREQYHQSKSPLRQGSYRGLAATANHFVRESYMD CCEEEEEECCCCCCCCCCCCHHHHHCCHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHH ELAESVKMDPLEFRLKNARDERLRNVIVAASEKFGWKQRKKAAGRGFGIAAGFEKGGYVA HHHHHHCCCHHHHHHHCCHHHHHHHHHEECCHHCCHHHHHHHCCCCCEEEECCCCCCEEE TCAEVSVDDKTGAVKVLRAVVAFECGAVVNPEHLRNQVEGAIVMGLGGALFEEIQFAEGR EEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEECCHHHHHHHHHHCCC ILNNRLARYRVPRFADTPVIESVLLDRKDLASAGAGETPIVGIAPAIGNAIFDANGKRIR HHHHHHHHHCCCCCCCCHHHHHHHHCHHHHHCCCCCCCCEEEECHHHCCEEECCCCCEEE RLPLMA CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2606906 [H]