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The map label for this gene is yqgF [C]

Identifier: 116626054

GI number: 116626054

Start: 8816306

End: 8816728

Strand: Direct

Name: yqgF [C]

Synonym: Acid_7012

Alternate gene names: 116626054

Gene position: 8816306-8816728 (Clockwise)

Preceding gene: 116626051

Following gene: 116626055

Centisome position: 88.47

GC content: 63.83

Gene sequence:

>423_bases
TTGACCCCCGACCTATCGCGCATTCTCGCACTTGACCTGGGCAAACGACGGATCGGGCTGGCGATCAGCGACCCGTTGCG
AATCACCGCGCAGGGACTCCCGAACCTGGTGCGGACGCGCATCCGCGACGATTTGGACGCGCTGGAACAACTGGTGAAGG
AGCGCGAGGTGGGGCTGGTGCTGCTGGGAAATCCGATCAATATGAAGGGGACCGAGGGGCGGCAATCGGGGTGGGTGCGG
GAGTTCGCGACCGCGATGGAGAAACGCACGGGCGTACCGGTGAAGTTGTGGGACGAGCGGCTGACCTCGGTGGAGGCTGG
GCGGGTGCTGCGTTCGAGCGGGATCAGTATTGAGAAGCGGGCCGCGGCGGTGGACAAATTGTCGGCGGTGATCCTGCTGC
AGAGTTACCTGGATTCGCTATGA

Upstream 100 bases:

>100_bases
GTCTTGCTGGTGATGCTGGAAGAGTGAGTTACGACGGCCACGGCGCCTTGTAGACCCTTTAAATCGACTGTAGCACGCGC
ACGTCTATAATGAAATTGAA

Downstream 100 bases:

>100_bases
AGCTTCTGCGGCGGCTGGGAGTGGTGATTCTGCTGATAGCGGCGGCGGGCGGTTTCGCGGCCTGGCGGCTGGCGCAGCCC
TACAGCGGCTTTCAGGGTGA

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MTPDLSRILALDLGKRRIGLAISDPLRITAQGLPNLVRTRIRDDLDALEQLVKEREVGLVLLGNPINMKGTEGRQSGWVR
EFATAMEKRTGVPVKLWDERLTSVEAGRVLRSSGISIEKRAAAVDKLSAVILLQSYLDSL

Sequences:

>Translated_140_residues
MTPDLSRILALDLGKRRIGLAISDPLRITAQGLPNLVRTRIRDDLDALEQLVKEREVGLVLLGNPINMKGTEGRQSGWVR
EFATAMEKRTGVPVKLWDERLTSVEAGRVLRSSGISIEKRAAAVDKLSAVILLQSYLDSL
>Mature_139_residues
TPDLSRILALDLGKRRIGLAISDPLRITAQGLPNLVRTRIRDDLDALEQLVKEREVGLVLLGNPINMKGTEGRQSGWVRE
FATAMEKRTGVPVKLWDERLTSVEAGRVLRSSGISIEKRAAAVDKLSAVILLQSYLDSL

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=131, Percent_Identity=38.1679389312977, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15459; Mature: 15328

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDLSRILALDLGKRRIGLAISDPLRITAQGLPNLVRTRIRDDLDALEQLVKEREVGLV
CCCHHHHHHHHHCCCCCCCEEECCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEE
LLGNPINMKGTEGRQSGWVREFATAMEKRTGVPVKLWDERLTSVEAGRVLRSSGISIEKR
EECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
AAAVDKLSAVILLQSYLDSL
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TPDLSRILALDLGKRRIGLAISDPLRITAQGLPNLVRTRIRDDLDALEQLVKEREVGLV
CCHHHHHHHHHCCCCCCCEEECCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEE
LLGNPINMKGTEGRQSGWVREFATAMEKRTGVPVKLWDERLTSVEAGRVLRSSGISIEKR
EECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
AAAVDKLSAVILLQSYLDSL
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA