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The map label for this gene is yhdW [H]

Identifier: 116626035

GI number: 116626035

Start: 8782040

End: 8782837

Strand: Reverse

Name: yhdW [H]

Synonym: Acid_6993

Alternate gene names: 116626035

Gene position: 8782837-8782040 (Counterclockwise)

Preceding gene: 116626036

Following gene: 116626028

Centisome position: 88.13

GC content: 60.78

Gene sequence:

>798_bases
ATGATTCGATTCCTGATTCTCACTATTCTGATTTTCGACGCGGCCCAGGCGCAGACTCGCCGCGTGGTCGCCATCGCGCA
TCGGGGCGAGCACCTCCATCATCCCGAGAACACGATGCCGGCATTCGAGGAGGCGGTCCACCTGGGGGCCGACTTCATCG
AGGTGGATGTCCGGACCACGGCCGATGGCAAGCTGGTGCTGAGCCACGATGCCAACGTGGACCGGTGCACCAACGGCAAC
GGGGAGGTCGCGAAGATGACCTTCGAAGAGATTCGGGCGCTCGATGCGGGGGGCAAGATGGGGCCGGAGTTCAAGGGCAC
GAAGGTCCCGACCTTCGACGAAGTGCTGAACTACGCGCGCGGGAAAATCAATATTTACGTGGACGTGAAGCAAGTCGCCG
CGAAGGAACTGGTGGCGCACATTGTGGATCACGGGATGGCGGACCACGTGGTGATCTACTCGGGGCGACTCTCGAAAGAC
ATTCAGCAGATCAATCCGAAGCTGAAGATCATGCCGGAATCGGTGAATATCGATCTGGTGCAGCGAATCGTCAGTGAGCT
GCATCCGAAGGTGATCGCGTTCGGTGCGTCCGACTGGAAGCCGGAGATTATCAAACTGGCGAAGGATTCCGGCGCGGAGC
TTTATGTGGACCGGCAGGGATCCGACCATGGCGTCCCGACGGACAATCCGGCTGGGTGGCAGGCGGCGATCGACGCAGGC
GCGGACGGAATTCAGACGGACCGGCCGGGGGAACTAGTCTCGTTCCTGCGGGAGAAGGGGTACAAGGAGAAGAGGTAG

Upstream 100 bases:

>100_bases
CGAACACGACGCTGGGGAACATCAATTACGGCAGGATCACGTCGGATAATGGACCTCGGAATATGGAACTCGGGCTGCGG
CTTTTCTTCTAAGGACGACT

Downstream 100 bases:

>100_bases
TAAAACCGGCGCGCAGCTAGGATTGGCGCCGGGTGCCGGGCGGGAGAAGCCGCCTGAAAGGCGGCTGCAGCCAAGATTGG
CTGCCCCACGAAGTCGTCGC

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MIRFLILTILIFDAAQAQTRRVVAIAHRGEHLHHPENTMPAFEEAVHLGADFIEVDVRTTADGKLVLSHDANVDRCTNGN
GEVAKMTFEEIRALDAGGKMGPEFKGTKVPTFDEVLNYARGKINIYVDVKQVAAKELVAHIVDHGMADHVVIYSGRLSKD
IQQINPKLKIMPESVNIDLVQRIVSELHPKVIAFGASDWKPEIIKLAKDSGAELYVDRQGSDHGVPTDNPAGWQAAIDAG
ADGIQTDRPGELVSFLREKGYKEKR

Sequences:

>Translated_265_residues
MIRFLILTILIFDAAQAQTRRVVAIAHRGEHLHHPENTMPAFEEAVHLGADFIEVDVRTTADGKLVLSHDANVDRCTNGN
GEVAKMTFEEIRALDAGGKMGPEFKGTKVPTFDEVLNYARGKINIYVDVKQVAAKELVAHIVDHGMADHVVIYSGRLSKD
IQQINPKLKIMPESVNIDLVQRIVSELHPKVIAFGASDWKPEIIKLAKDSGAELYVDRQGSDHGVPTDNPAGWQAAIDAG
ADGIQTDRPGELVSFLREKGYKEKR
>Mature_265_residues
MIRFLILTILIFDAAQAQTRRVVAIAHRGEHLHHPENTMPAFEEAVHLGADFIEVDVRTTADGKLVLSHDANVDRCTNGN
GEVAKMTFEEIRALDAGGKMGPEFKGTKVPTFDEVLNYARGKINIYVDVKQVAAKELVAHIVDHGMADHVVIYSGRLSKD
IQQINPKLKIMPESVNIDLVQRIVSELHPKVIAFGASDWKPEIIKLAKDSGAELYVDRQGSDHGVPTDNPAGWQAAIDAG
ADGIQTDRPGELVSFLREKGYKEKR

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Homo sapiens, GI7706617, Length=118, Percent_Identity=41.5254237288136, Blast_Score=83, Evalue=2e-16,
Organism=Escherichia coli, GI1789858, Length=96, Percent_Identity=32.2916666666667, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6325050, Length=95, Percent_Identity=34.7368421052632, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 29219; Mature: 29219

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFLILTILIFDAAQAQTRRVVAIAHRGEHLHHPENTMPAFEEAVHLGADFIEVDVRTT
CHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEC
ADGKLVLSHDANVDRCTNGNGEVAKMTFEEIRALDAGGKMGPEFKGTKVPTFDEVLNYAR
CCCEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCC
GKINIYVDVKQVAAKELVAHIVDHGMADHVVIYSGRLSKDIQQINPKLKIMPESVNIDLV
CEEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCEEEECCCCCHHHH
QRIVSELHPKVIAFGASDWKPEIIKLAKDSGAELYVDRQGSDHGVPTDNPAGWQAAIDAG
HHHHHHHCCEEEEECCCCCCCHHHHEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCC
ADGIQTDRPGELVSFLREKGYKEKR
CCCCCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIRFLILTILIFDAAQAQTRRVVAIAHRGEHLHHPENTMPAFEEAVHLGADFIEVDVRTT
CHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEC
ADGKLVLSHDANVDRCTNGNGEVAKMTFEEIRALDAGGKMGPEFKGTKVPTFDEVLNYAR
CCCEEEEECCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCC
GKINIYVDVKQVAAKELVAHIVDHGMADHVVIYSGRLSKDIQQINPKLKIMPESVNIDLV
CEEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCEEEECCCCCHHHH
QRIVSELHPKVIAFGASDWKPEIIKLAKDSGAELYVDRQGSDHGVPTDNPAGWQAAIDAG
HHHHHHHCCEEEEECCCCCCCHHHHEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHCC
ADGIQTDRPGELVSFLREKGYKEKR
CCCCCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]