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The map label for this gene is hypD2 [H]

Identifier: 116625971

GI number: 116625971

Start: 8701040

End: 8702131

Strand: Direct

Name: hypD2 [H]

Synonym: Acid_6929

Alternate gene names: 116625971

Gene position: 8701040-8702131 (Clockwise)

Preceding gene: 116625970

Following gene: 116625972

Centisome position: 87.31

GC content: 66.21

Gene sequence:

>1092_bases
GTGAAATACATCGACGAATACCGCGATGCGGGGCGCGCGCGCCAAACCGCCTCGGCCATCCGCTCGCGCGTGACACGCCC
CTGGGTCCTGATGGAGATCTGCGGCGGCCAGACCCACACCATCATGCGCTACGGCCTGCCGGACCTGCTGCCCCCCACTC
TCGAGTTCGTACACGGCCCCGGTTGCCCGGTGTGCGTAACGCCGCTCGAAGTCATCGACGCCGCCATTGAAATCGCCGCG
CGGCGCGAGGTCATCATGGCGTGTTACGGCGACATGATGCGCGTGCCAGGCTCGCATACGGATCTGCTGCGTGCGAGAGC
CGCGGGCGCGGACGTCCGCATCGTCTACTCCCCCACCGACGCGCTGCAACTGGCTCGCCGGAACCCGGCTCGTGAGATTG
TCTTCTTCGCCATCGGGTTTGAGACCACCGCGCCACCCAACGCGATGGCCGTATGGCTGGCTCGCCGCGAGGGGTTGAAG
AACTTCTCGATGCTCGGTTCGCACGTTCGCGTCCCGCCGGCGGTGCGGCTGATCCTCGGCTCGGAAGGCAATCGCGTCAA
TGGGCTCATCGCACCCGGCCACGTCTGCACGATCATGGGCCTGGAGGAATATGAGGAGTTGAGCCGCGAATTCCGGATTC
CCATTGTCGCCGGCGGATTCGAGCCGCTCGACGTGCTGGAAGCGACGCGCATGCTGGTGTGCCAGCTGGAAGAGGGACGC
TTCGAGGTAGAGAACGAGTACGGCCGCTGCCTCTCGCGGGATGGCAACCCAGCCGCGCGTAAGATCCTGGCCGAGGTCTT
CGAAATCGCGGACCGCAAGTGGCGCGGCATCGGCGTGATTCCCAAGGGAGGCTTCGCGGTTCGCCAGGAGTTCGCCGCCT
GGGACGCGGCGCGGCGCTTCGACGTCGCCGATCGCGACGTTCCCGAACCGGCCGAATGCAAGAGCGCGCTGGTGCTGCAA
GGCCGGCTGAAACCGACCGAATGTCCGGCCTTCGGGAAGCAGTGTACACCGCAGGCGCCGCTCGGCGCACCCATGGTTTC
GAGCGAAGGCGCGTGTGCCGCGTGGTACCAGTTCAAAGGTAGAGCATCATGA

Upstream 100 bases:

>100_bases
TCGGTTTCGCGATCGCCAAAGTGGACGCAGCCGAAGCGCAGCGCACGCTCGAACTGCTTACCGAAATGGGCGCGATGGAA
GAGGTCGAGGGCCTCTCCTC

Downstream 100 bases:

>100_bases
ACTTCACTTGTCCGACTCCCCTCACGGGCTCCGACCGGATTCTTCTCGGCCACGGCAGCGGCGGCACCCTCAGTGCCGCG
TTGCTGAGCGAGATCGTTCT

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MKYIDEYRDAGRARQTASAIRSRVTRPWVLMEICGGQTHTIMRYGLPDLLPPTLEFVHGPGCPVCVTPLEVIDAAIEIAA
RREVIMACYGDMMRVPGSHTDLLRARAAGADVRIVYSPTDALQLARRNPAREIVFFAIGFETTAPPNAMAVWLARREGLK
NFSMLGSHVRVPPAVRLILGSEGNRVNGLIAPGHVCTIMGLEEYEELSREFRIPIVAGGFEPLDVLEATRMLVCQLEEGR
FEVENEYGRCLSRDGNPAARKILAEVFEIADRKWRGIGVIPKGGFAVRQEFAAWDAARRFDVADRDVPEPAECKSALVLQ
GRLKPTECPAFGKQCTPQAPLGAPMVSSEGACAAWYQFKGRAS

Sequences:

>Translated_363_residues
MKYIDEYRDAGRARQTASAIRSRVTRPWVLMEICGGQTHTIMRYGLPDLLPPTLEFVHGPGCPVCVTPLEVIDAAIEIAA
RREVIMACYGDMMRVPGSHTDLLRARAAGADVRIVYSPTDALQLARRNPAREIVFFAIGFETTAPPNAMAVWLARREGLK
NFSMLGSHVRVPPAVRLILGSEGNRVNGLIAPGHVCTIMGLEEYEELSREFRIPIVAGGFEPLDVLEATRMLVCQLEEGR
FEVENEYGRCLSRDGNPAARKILAEVFEIADRKWRGIGVIPKGGFAVRQEFAAWDAARRFDVADRDVPEPAECKSALVLQ
GRLKPTECPAFGKQCTPQAPLGAPMVSSEGACAAWYQFKGRAS
>Mature_363_residues
MKYIDEYRDAGRARQTASAIRSRVTRPWVLMEICGGQTHTIMRYGLPDLLPPTLEFVHGPGCPVCVTPLEVIDAAIEIAA
RREVIMACYGDMMRVPGSHTDLLRARAAGADVRIVYSPTDALQLARRNPAREIVFFAIGFETTAPPNAMAVWLARREGLK
NFSMLGSHVRVPPAVRLILGSEGNRVNGLIAPGHVCTIMGLEEYEELSREFRIPIVAGGFEPLDVLEATRMLVCQLEEGR
FEVENEYGRCLSRDGNPAARKILAEVFEIADRKWRGIGVIPKGGFAVRQEFAAWDAARRFDVADRDVPEPAECKSALVLQ
GRLKPTECPAFGKQCTPQAPLGAPMVSSEGACAAWYQFKGRAS

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=371, Percent_Identity=43.9353099730458, Blast_Score=336, Evalue=1e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 39954; Mature: 39954

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYIDEYRDAGRARQTASAIRSRVTRPWVLMEICGGQTHTIMRYGLPDLLPPTLEFVHGP
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHCCC
GCPVCVTPLEVIDAAIEIAARREVIMACYGDMMRVPGSHTDLLRARAAGADVRIVYSPTD
CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCHH
ALQLARRNPAREIVFFAIGFETTAPPNAMAVWLARREGLKNFSMLGSHVRVPPAVRLILG
HHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCHHEEEEEC
SEGNRVNGLIAPGHVCTIMGLEEYEELSREFRIPIVAGGFEPLDVLEATRMLVCQLEEGR
CCCCEECEEECCCCEEEEECHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHEEEECCCC
FEVENEYGRCLSRDGNPAARKILAEVFEIADRKWRGIGVIPKGGFAVRQEFAAWDAARRF
EEECCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHC
DVADRDVPEPAECKSALVLQGRLKPTECPAFGKQCTPQAPLGAPMVSSEGACAAWYQFKG
CCCCCCCCCHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
RAS
CCC
>Mature Secondary Structure
MKYIDEYRDAGRARQTASAIRSRVTRPWVLMEICGGQTHTIMRYGLPDLLPPTLEFVHGP
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCHHHHHHCCC
GCPVCVTPLEVIDAAIEIAARREVIMACYGDMMRVPGSHTDLLRARAAGADVRIVYSPTD
CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCHH
ALQLARRNPAREIVFFAIGFETTAPPNAMAVWLARREGLKNFSMLGSHVRVPPAVRLILG
HHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCHHEEEEEC
SEGNRVNGLIAPGHVCTIMGLEEYEELSREFRIPIVAGGFEPLDVLEATRMLVCQLEEGR
CCCCEECEEECCCCEEEEECHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHEEEECCCC
FEVENEYGRCLSRDGNPAARKILAEVFEIADRKWRGIGVIPKGGFAVRQEFAAWDAARRF
EEECCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHC
DVADRDVPEPAECKSALVLQGRLKPTECPAFGKQCTPQAPLGAPMVSSEGACAAWYQFKG
CCCCCCCCCHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
RAS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]