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The map label for this gene is xerC [H]

Identifier: 116625838

GI number: 116625838

Start: 8518863

End: 8519798

Strand: Direct

Name: xerC [H]

Synonym: Acid_6791

Alternate gene names: 116625838

Gene position: 8518863-8519798 (Clockwise)

Preceding gene: 116625835

Following gene: 116625840

Centisome position: 85.48

GC content: 63.14

Gene sequence:

>936_bases
ATGAAGAACTCTCGGCGAAAGAAGAATCCCAGACGGGTGTTGCGCCTGCCCGACCTGGACTACGCCAAGGGCGCGGTACT
GAACACGCTCGGCTCCCCGGCATCGAAGCGGGCGTATGAGTTCGCCATTGATGATTTCGTCAACTGGTACTGCTCGGAGC
CGAGATTGGCTTTCAGCAAAAGGGTCGTTTTACGCTACCGGATCGAACTCGAATCCCGTCACCTCGCCCCGGCCACCATC
AACCTTCGACTGGCGGCGATGCGGCGATTAGCGTTCGAAGCTGCCGATACGGGACTACCCAGCCCGGAACTGGCGGCGGG
CATCAGGCGCGTGAAGGGGGCCAAACGGGTCGGCGTGCGCCTGGAGAACTGGTTAACGGCGGAACAGAGCCGAGCCCTGC
TCCGGGCTCCCGACGCCCAACGGCTGAAGGGTCGCCGCGACCGGGCAATGCTGGCATTGATGCTCGGTTGCGGTCTGCGC
CGGGGAGAGATTGCGGCCCTCCGACTCGATCATCTTCAACAGCGGGAGGACCATTCGGTGATTGCCGACTTGGTTGACAA
GGCCGCGCACATCCGTACGGTCCCCGTGCCGGGCTGGGTGAAGGCTGCGGTTGACGAGTGGGTGACCTCAGCAGCGATCA
CGGACGGGCGGCTGTTCCGGTGCGTCAGCCGGAAGGAATCGGTTTGGGGCTCCGGCATCACAGAGAAGGTGATTTGGCAT
GTGGTGAAAGCCGCTGCGGCGGCTGCCGGGATTGCCAAGTTGTCGCTGCACGATTGTCGCCGGACCTGCGCCCGTCTGTG
CCACGCTGCCGGTGGTGAGCTTGAGCAGATCCAGTTTCTCCTGGGGCATGTTTCTGTAGAGACGACAGAACGCTACCTGG
GCTGCAAGCAGCGGCTCCGAAGTGCCGTGAACGATCACATCGGCCTGGAGCCGTAG

Upstream 100 bases:

>100_bases
GTGGCACGTCGATTTGCTCCGCTAAACTCTGAACACCGTAGTTTAACCCTTTGCCCGAAGTTGAAGCGGCAATATGGACT
GGCGGCAGGAGGCCGCATCC

Downstream 100 bases:

>100_bases
CGGCCCTACTTTCTCCTGATACCACTTTCACGTCCGTTGATGAACCGCTAGAAATGGTCTTCGGGATGTTGCGATTCCTC
ATACGGAGTGAATCTCCGCT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MKNSRRKKNPRRVLRLPDLDYAKGAVLNTLGSPASKRAYEFAIDDFVNWYCSEPRLAFSKRVVLRYRIELESRHLAPATI
NLRLAAMRRLAFEAADTGLPSPELAAGIRRVKGAKRVGVRLENWLTAEQSRALLRAPDAQRLKGRRDRAMLALMLGCGLR
RGEIAALRLDHLQQREDHSVIADLVDKAAHIRTVPVPGWVKAAVDEWVTSAAITDGRLFRCVSRKESVWGSGITEKVIWH
VVKAAAAAAGIAKLSLHDCRRTCARLCHAAGGELEQIQFLLGHVSVETTERYLGCKQRLRSAVNDHIGLEP

Sequences:

>Translated_311_residues
MKNSRRKKNPRRVLRLPDLDYAKGAVLNTLGSPASKRAYEFAIDDFVNWYCSEPRLAFSKRVVLRYRIELESRHLAPATI
NLRLAAMRRLAFEAADTGLPSPELAAGIRRVKGAKRVGVRLENWLTAEQSRALLRAPDAQRLKGRRDRAMLALMLGCGLR
RGEIAALRLDHLQQREDHSVIADLVDKAAHIRTVPVPGWVKAAVDEWVTSAAITDGRLFRCVSRKESVWGSGITEKVIWH
VVKAAAAAAGIAKLSLHDCRRTCARLCHAAGGELEQIQFLLGHVSVETTERYLGCKQRLRSAVNDHIGLEP
>Mature_311_residues
MKNSRRKKNPRRVLRLPDLDYAKGAVLNTLGSPASKRAYEFAIDDFVNWYCSEPRLAFSKRVVLRYRIELESRHLAPATI
NLRLAAMRRLAFEAADTGLPSPELAAGIRRVKGAKRVGVRLENWLTAEQSRALLRAPDAQRLKGRRDRAMLALMLGCGLR
RGEIAALRLDHLQQREDHSVIADLVDKAAHIRTVPVPGWVKAAVDEWVTSAAITDGRLFRCVSRKESVWGSGITEKVIWH
VVKAAAAAAGIAKLSLHDCRRTCARLCHAAGGELEQIQFLLGHVSVETTERYLGCKQRLRSAVNDHIGLEP

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34686; Mature: 34686

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: PS00189 LIPOYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSRRKKNPRRVLRLPDLDYAKGAVLNTLGSPASKRAYEFAIDDFVNWYCSEPRLAFSK
CCCCCCCCCCHHEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
RVVLRYRIELESRHLAPATINLRLAAMRRLAFEAADTGLPSPELAAGIRRVKGAKRVGVR
HEEEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHCCH
LENWLTAEQSRALLRAPDAQRLKGRRDRAMLALMLGCGLRRGEIAALRLDHLQQREDHSV
HHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
IADLVDKAAHIRTVPVPGWVKAAVDEWVTSAAITDGRLFRCVSRKESVWGSGITEKVIWH
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH
VVKAAAAAAGIAKLSLHDCRRTCARLCHAAGGELEQIQFLLGHVSVETTERYLGCKQRLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAVNDHIGLEP
HHHHHCCCCCC
>Mature Secondary Structure
MKNSRRKKNPRRVLRLPDLDYAKGAVLNTLGSPASKRAYEFAIDDFVNWYCSEPRLAFSK
CCCCCCCCCCHHEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
RVVLRYRIELESRHLAPATINLRLAAMRRLAFEAADTGLPSPELAAGIRRVKGAKRVGVR
HEEEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHCCH
LENWLTAEQSRALLRAPDAQRLKGRRDRAMLALMLGCGLRRGEIAALRLDHLQQREDHSV
HHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
IADLVDKAAHIRTVPVPGWVKAAVDEWVTSAAITDGRLFRCVSRKESVWGSGITEKVIWH
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH
VVKAAAAAAGIAKLSLHDCRRTCARLCHAAGGELEQIQFLLGHVSVETTERYLGCKQRLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAVNDHIGLEP
HHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA