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The map label for this gene is abfA [H]

Identifier: 116625822

GI number: 116625822

Start: 8493846

End: 8494265

Strand: Reverse

Name: abfA [H]

Synonym: Acid_6773

Alternate gene names: 116625822

Gene position: 8494265-8493846 (Counterclockwise)

Preceding gene: 116625823

Following gene: 116625821

Centisome position: 85.24

GC content: 62.14

Gene sequence:

>420_bases
ATGAAATCGAATCGTCGTGACTTTTTCCGTACCCTAAGTGTTTCCAGTGCCGCGCTCGCGGCCAGCTCGTGGCTCCAACC
GCGGGGGTTCGCCCAGGCCCGGGTGCCCGCCCAGGGGTCCGCCCGGACCATCATCAAATACGTACACCACAAAGGGAACA
TGGACCGGCGCATTTTCGGTTCTTTTCTCGAACACCTGGGCCGCGGGGTGTACGAGGGTGTTTACGATCCGAAATCGCCG
CTGGCGGACGCGAACGGGTTCCGCAAAGATGTGATGGCCGAAGTCAAAGCGCTGGGGGTACCCATCACGCGGTATCCGGG
AGGTAATTTCGTCTCCGGCTACAACTGGCTGGATGGCGTGGGCCCGAAAAGCCAGCGGCCGACAGTGCTGGACGGGGCCT
GGAATACCCTCGGCCGGTAG

Upstream 100 bases:

>100_bases
TGATCGGGTAGGTATGTCAGAGCTCCATATCAGATGCCCCCTCGAAGTTCCGGCCCGATGGATCGTTGCTACCTGTGACT
TAAGTGAGGTCCACCTTAGG

Downstream 100 bases:

>100_bases
TTTTCCCGGCTCTGGTGTGGGCAGGAAGGAGAGTTATGAGAACGCACATTCGGCCACTTGTGGCGACATGCCTGCTGTGG
GCAGCGACGGCCGCCCCGTC

Product: alpha-L-arabinofuranosidase-like protein

Products: NA

Alternate protein names: Arabinosidase [H]

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKSNRRDFFRTLSVSSAALAASSWLQPRGFAQARVPAQGSARTIIKYVHHKGNMDRRIFGSFLEHLGRGVYEGVYDPKSP
LADANGFRKDVMAEVKALGVPITRYPGGNFVSGYNWLDGVGPKSQRPTVLDGAWNTLGR

Sequences:

>Translated_139_residues
MKSNRRDFFRTLSVSSAALAASSWLQPRGFAQARVPAQGSARTIIKYVHHKGNMDRRIFGSFLEHLGRGVYEGVYDPKSP
LADANGFRKDVMAEVKALGVPITRYPGGNFVSGYNWLDGVGPKSQRPTVLDGAWNTLGR
>Mature_139_residues
MKSNRRDFFRTLSVSSAALAASSWLQPRGFAQARVPAQGSARTIIKYVHHKGNMDRRIFGSFLEHLGRGVYEGVYDPKSP
LADANGFRKDVMAEVKALGVPITRYPGGNFVSGYNWLDGVGPKSQRPTVLDGAWNTLGR

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 15298; Mature: 15298

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNRRDFFRTLSVSSAALAASSWLQPRGFAQARVPAQGSARTIIKYVHHKGNMDRRIFG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHH
SFLEHLGRGVYEGVYDPKSPLADANGFRKDVMAEVKALGVPITRYPGGNFVSGYNWLDGV
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCC
GPKSQRPTVLDGAWNTLGR
CCCCCCCCEECCCHHHCCC
>Mature Secondary Structure
MKSNRRDFFRTLSVSSAALAASSWLQPRGFAQARVPAQGSARTIIKYVHHKGNMDRRIFG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHH
SFLEHLGRGVYEGVYDPKSPLADANGFRKDVMAEVKALGVPITRYPGGNFVSGYNWLDGV
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCC
GPKSQRPTVLDGAWNTLGR
CCCCCCCCEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7887599 [H]