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The map label for this gene is rbcR [H]

Identifier: 116625718

GI number: 116625718

Start: 8370195

End: 8371118

Strand: Reverse

Name: rbcR [H]

Synonym: Acid_6667

Alternate gene names: 116625718

Gene position: 8371118-8370195 (Counterclockwise)

Preceding gene: 116625719

Following gene: 116625717

Centisome position: 84.0

GC content: 63.31

Gene sequence:

>924_bases
GTGGAACCGATTCGTCTGCGGGTATTTCGGATTGTGGCGGAGGAGCTCAGCTTCACGCGGGCGGCGGAACGGCTGTTTCT
GACGCAGCCGGCGGTCACGATGCAGGTTAAGAACCTGGAGGAGGAACTGGGGCTGCGGTTGTTCGACCGGACGGGGCAAC
GCATCGTGCTTACGCCGGCGGGGCGAATTCTGGACGACTACACGAAGCGCATCGCTGCGCTATGCGGAGATGCGGAACGC
GACCTGGCGGTGTTGAAGGGTGAGACACGGGGACGATTGGCGCTGGGCGCCTCGACCACGATTGCGCAGTATTTGCTGCC
GCGGCTGGCGGGCGAGTTTCTGGCGGCCTTTCCGGCCATTCAATTTTCCATCATCAGCGGCAACACCAGCGATATTGTGG
CGGCGCTGGCGGACGGGCGGATCGGGCTGGGGCTGATCGAAGGTCCCGCGGGGCGGAGCGATGTGAAGTGCGAGCCGTTC
GTAGAGGACGAGATCGTGCTGGTCACTCCGCCGGCGCACGAGTTCGCGGCGGGTGGCGAGTTGGATCCGGCGGCGCTCAA
GGCGGCATCGATTATTTTGCGGGAGCACGGCAGCGGGACGCGGCAGGTAGTGGAAGAGGCGCTGAAGAGAGCGCGATTGG
ATACGCGCGGGCTCAAGATCACACTGGAACTCGACTCGACGGAATCGATCAAATCGGCAATAGCGGCAGGGCTTGGGGTG
GGCTTCGTATCGAGGTGGGCGCTCGGGAAGGAGATCGCTCTGGGGCTGTTACGCACGGTTCCAGTGAAGGGGCTGCGTAT
TCGACGACATTTTCAATTTGTGTATCTTCAGGGTCCCGCGCCGGGGGGATTGGAAGGGGAGTTCCTGCGCTTTGCGGCCG
TCAAGCGCGCCGACTTCGGCGAACCGCACGACGGTTTGCTTTGA

Upstream 100 bases:

>100_bases
GGCGAGATCAACGGGCTGATGACGTATGACCGGCAGGTGATGAAGTTCGATGTGGGAAAGCTGGCCGAGATGCACCGGCG
GCTGATTTTGGGGAAGTGAC

Downstream 100 bases:

>100_bases
TTCAGTGGCACGGTTCCTGCACAAGGTTTGTGCATAGGAGAAAGTTTCATGCACCGTACCCTGATCTGTAGTTTTCTGAT
GGTTGGAGGCCTGGCAATGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MEPIRLRVFRIVAEELSFTRAAERLFLTQPAVTMQVKNLEEELGLRLFDRTGQRIVLTPAGRILDDYTKRIAALCGDAER
DLAVLKGETRGRLALGASTTIAQYLLPRLAGEFLAAFPAIQFSIISGNTSDIVAALADGRIGLGLIEGPAGRSDVKCEPF
VEDEIVLVTPPAHEFAAGGELDPAALKAASIILREHGSGTRQVVEEALKRARLDTRGLKITLELDSTESIKSAIAAGLGV
GFVSRWALGKEIALGLLRTVPVKGLRIRRHFQFVYLQGPAPGGLEGEFLRFAAVKRADFGEPHDGLL

Sequences:

>Translated_307_residues
MEPIRLRVFRIVAEELSFTRAAERLFLTQPAVTMQVKNLEEELGLRLFDRTGQRIVLTPAGRILDDYTKRIAALCGDAER
DLAVLKGETRGRLALGASTTIAQYLLPRLAGEFLAAFPAIQFSIISGNTSDIVAALADGRIGLGLIEGPAGRSDVKCEPF
VEDEIVLVTPPAHEFAAGGELDPAALKAASIILREHGSGTRQVVEEALKRARLDTRGLKITLELDSTESIKSAIAAGLGV
GFVSRWALGKEIALGLLRTVPVKGLRIRRHFQFVYLQGPAPGGLEGEFLRFAAVKRADFGEPHDGLL
>Mature_307_residues
MEPIRLRVFRIVAEELSFTRAAERLFLTQPAVTMQVKNLEEELGLRLFDRTGQRIVLTPAGRILDDYTKRIAALCGDAER
DLAVLKGETRGRLALGASTTIAQYLLPRLAGEFLAAFPAIQFSIISGNTSDIVAALADGRIGLGLIEGPAGRSDVKCEPF
VEDEIVLVTPPAHEFAAGGELDPAALKAASIILREHGSGTRQVVEEALKRARLDTRGLKITLELDSTESIKSAIAAGLGV
GFVSRWALGKEIALGLLRTVPVKGLRIRRHFQFVYLQGPAPGGLEGEFLRFAAVKRADFGEPHDGLL

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=269, Percent_Identity=34.5724907063197, Blast_Score=140, Evalue=7e-35,
Organism=Escherichia coli, GI1788748, Length=244, Percent_Identity=29.9180327868852, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082132, Length=261, Percent_Identity=29.5019157088123, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI157672245, Length=226, Percent_Identity=27.4336283185841, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787806, Length=170, Percent_Identity=31.7647058823529, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI145693105, Length=242, Percent_Identity=27.2727272727273, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787879, Length=264, Percent_Identity=28.4090909090909, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788296, Length=249, Percent_Identity=26.1044176706827, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787530, Length=247, Percent_Identity=25.5060728744939, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790262, Length=240, Percent_Identity=27.5, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790399, Length=278, Percent_Identity=25.5395683453237, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789204, Length=247, Percent_Identity=26.7206477732794, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789173, Length=166, Percent_Identity=33.7349397590361, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788297, Length=240, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=24.5733788395904, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1789506, Length=208, Percent_Identity=25.9615384615385, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789639, Length=144, Percent_Identity=31.25, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788706, Length=190, Percent_Identity=28.4210526315789, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788887, Length=192, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=204, Percent_Identity=24.5098039215686, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367136, Length=96, Percent_Identity=41.6666666666667, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693193, Length=261, Percent_Identity=26.8199233716475, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI87081904, Length=271, Percent_Identity=26.1992619926199, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33186; Mature: 33186

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPIRLRVFRIVAEELSFTRAAERLFLTQPAVTMQVKNLEEELGLRLFDRTGQRIVLTPA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCEEEECCC
GRILDDYTKRIAALCGDAERDLAVLKGETRGRLALGASTTIAQYLLPRLAGEFLAAFPAI
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCE
QFSIISGNTSDIVAALADGRIGLGLIEGPAGRSDVKCEPFVEDEIVLVTPPAHEFAAGGE
EEEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCHHHCCCCC
LDPAALKAASIILREHGSGTRQVVEEALKRARLDTRGLKITLELDSTESIKSAIAAGLGV
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHH
GFVSRWALGKEIALGLLRTVPVKGLRIRRHFQFVYLQGPAPGGLEGEFLRFAAVKRADFG
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCC
EPHDGLL
CCCCCCC
>Mature Secondary Structure
MEPIRLRVFRIVAEELSFTRAAERLFLTQPAVTMQVKNLEEELGLRLFDRTGQRIVLTPA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCEEEECCC
GRILDDYTKRIAALCGDAERDLAVLKGETRGRLALGASTTIAQYLLPRLAGEFLAAFPAI
HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCE
QFSIISGNTSDIVAALADGRIGLGLIEGPAGRSDVKCEPFVEDEIVLVTPPAHEFAAGGE
EEEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCHHHCCCCC
LDPAALKAASIILREHGSGTRQVVEEALKRARLDTRGLKITLELDSTESIKSAIAAGLGV
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHH
GFVSRWALGKEIALGLLRTVPVKGLRIRRHFQFVYLQGPAPGGLEGEFLRFAAVKRADFG
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCC
EPHDGLL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA