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The map label for this gene is scpB [H]

Identifier: 116625543

GI number: 116625543

Start: 8136300

End: 8137226

Strand: Direct

Name: scpB [H]

Synonym: Acid_6490

Alternate gene names: 116625543

Gene position: 8136300-8137226 (Clockwise)

Preceding gene: 116625542

Following gene: 116625544

Centisome position: 81.64

GC content: 61.92

Gene sequence:

>927_bases
ATGGAAGACAAGGAATTCACTCCTGAGGGCGTAAGCCCGGAACCTGAACCGGTACAACCGGCAGAAGAAATCGCGGCCGA
AGCGGTCGTAGCGGAAATCCCCGTGGAAGCGACGGCGGAAGCGGAAGACCCAGCTATATCGGTGGATGAGTTGATGGGCA
CTCGCGACGCCGCCCTCGAAGCAGAGCCTGCCGCGGTCTCCCAGGAGGATAGCCAGGTAAAGGCGGTCCTCGAGGCCATT
GTTTATGTGGCCGATGAACCGTTGACCCTGGCGCAGATCGCCGCCTCTCTTCAGCAACCTCCGGAGCGCATCAAAGAACT
GCTCGACCAGTTGATCGCCGAATTCGACCAGCCAGGCCACGGCGTCGCGATCCGCGAGGTGGCCGGCGGCTACAAGATGG
CTACCAAGCCCGAGCATCACGAGGCCGTTCGCAATTTCGTCAAGAGCCTGAAGCCGCCGTTGAAGCTCTCGCTGCCCGCG
CTTGAGACCCTGGCCGTGATCGCGTACAAACAGCCTGCTACGGGTCCGGAGATCATGGAAATCCGCGGTGTGCAGGGCGG
CGGCGTTTTCAAAACGCTGCTGGATCGCAAATTGATCGCGGTGGCCGGCCGCAAGAATGTCATCGGGAAGCCGATTCTTT
ACAAGACCACCAAGGAATTTCTGATCCAGTTCGGCTTGAAGGACCTGAGCGAACTGCCGTCGCTCAAGGAATTCGAAGAG
ATTCGCCGCATGGCCTTCGCGGATATCGAGTTGCCGCCCGTGGAGACCCTGCCCGACGCTCCGCTGCAGGCCACCGAGGC
GGAAGCCGTCGCCGAACTGGACGCCGCCGAGCCCGCCACCGAACCGACCGAACCGGGTGAGCCGGGTGAGACGGCAGAAC
CGGCCGAACCACCCTCGGAGCCCGTACCGCAAAGTGAGGAAAACTAA

Upstream 100 bases:

>100_bases
TTCGGCGAAATCGCCCTCAAGCGGCATAGCAGTTTCGACGCGGTCTTCGCGACGGACCAGCCGATGTCCGCCATCGAAAA
AGACTACATCTGATCAAGCA

Downstream 100 bases:

>100_bases
GTGGCCGAAGAGCGTCTCCAGAAGATCCTCTCTCAAGCCGGTGTATCTTCCCGCCGTCAGGCCGAGAAGCTCATGCAGGA
AGGCCGCGTCACGGTCAACG

Product: condensin subunit ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MEDKEFTPEGVSPEPEPVQPAEEIAAEAVVAEIPVEATAEAEDPAISVDELMGTRDAALEAEPAAVSQEDSQVKAVLEAI
VYVADEPLTLAQIAASLQQPPERIKELLDQLIAEFDQPGHGVAIREVAGGYKMATKPEHHEAVRNFVKSLKPPLKLSLPA
LETLAVIAYKQPATGPEIMEIRGVQGGGVFKTLLDRKLIAVAGRKNVIGKPILYKTTKEFLIQFGLKDLSELPSLKEFEE
IRRMAFADIELPPVETLPDAPLQATEAEAVAELDAAEPATEPTEPGEPGETAEPAEPPSEPVPQSEEN

Sequences:

>Translated_308_residues
MEDKEFTPEGVSPEPEPVQPAEEIAAEAVVAEIPVEATAEAEDPAISVDELMGTRDAALEAEPAAVSQEDSQVKAVLEAI
VYVADEPLTLAQIAASLQQPPERIKELLDQLIAEFDQPGHGVAIREVAGGYKMATKPEHHEAVRNFVKSLKPPLKLSLPA
LETLAVIAYKQPATGPEIMEIRGVQGGGVFKTLLDRKLIAVAGRKNVIGKPILYKTTKEFLIQFGLKDLSELPSLKEFEE
IRRMAFADIELPPVETLPDAPLQATEAEAVAELDAAEPATEPTEPGEPGETAEPAEPPSEPVPQSEEN
>Mature_308_residues
MEDKEFTPEGVSPEPEPVQPAEEIAAEAVVAEIPVEATAEAEDPAISVDELMGTRDAALEAEPAAVSQEDSQVKAVLEAI
VYVADEPLTLAQIAASLQQPPERIKELLDQLIAEFDQPGHGVAIREVAGGYKMATKPEHHEAVRNFVKSLKPPLKLSLPA
LETLAVIAYKQPATGPEIMEIRGVQGGGVFKTLLDRKLIAVAGRKNVIGKPILYKTTKEFLIQFGLKDLSELPSLKEFEE
IRRMAFADIELPPVETLPDAPLQATEAEAVAELDAAEPATEPTEPGEPGETAEPAEPPSEPVPQSEEN

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 33094; Mature: 33094

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDKEFTPEGVSPEPEPVQPAEEIAAEAVVAEIPVEATAEAEDPAISVDELMGTRDAALE
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHCC
AEPAAVSQEDSQVKAVLEAIVYVADEPLTLAQIAASLQQPPERIKELLDQLIAEFDQPGH
CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
GVAIREVAGGYKMATKPEHHEAVRNFVKSLKPPLKLSLPALETLAVIAYKQPATGPEIME
CEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHCCCCCCCCCCEE
IRGVQGGGVFKTLLDRKLIAVAGRKNVIGKPILYKTTKEFLIQFGLKDLSELPSLKEFEE
EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IRRMAFADIELPPVETLPDAPLQATEAEAVAELDAAEPATEPTEPGEPGETAEPAEPPSE
HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
PVPQSEEN
CCCCCCCC
>Mature Secondary Structure
MEDKEFTPEGVSPEPEPVQPAEEIAAEAVVAEIPVEATAEAEDPAISVDELMGTRDAALE
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHCC
AEPAAVSQEDSQVKAVLEAIVYVADEPLTLAQIAASLQQPPERIKELLDQLIAEFDQPGH
CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
GVAIREVAGGYKMATKPEHHEAVRNFVKSLKPPLKLSLPALETLAVIAYKQPATGPEIME
CEEHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHCCCCCCCCCCEE
IRGVQGGGVFKTLLDRKLIAVAGRKNVIGKPILYKTTKEFLIQFGLKDLSELPSLKEFEE
EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IRRMAFADIELPPVETLPDAPLQATEAEAVAELDAAEPATEPTEPGEPGETAEPAEPPSE
HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
PVPQSEEN
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA