| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is uvrA [H]
Identifier: 116625496
GI number: 116625496
Start: 8072575
End: 8075364
Strand: Direct
Name: uvrA [H]
Synonym: Acid_6443
Alternate gene names: 116625496
Gene position: 8072575-8075364 (Clockwise)
Preceding gene: 116625493
Following gene: 116625497
Centisome position: 81.0
GC content: 62.04
Gene sequence:
>2790_bases GTGCAAGATTATATTGCGATCCGCGGCGCGCGGGTCCACAACCTCAAGAATATTTCGCTGTGTATCCCCCATAATCAGCT CACCGTGGTCACCGGTGTGTCGGGGTCCGGGAAATCCTCGCTCGCTTTCGACACTATCTATGCCGAGGGGCAGCGCCGCT ACGTGGAATCGCTCTCCGCTTATGCCCGGCAGTTCCTGGAGCGCATGGAGAAGCCGGACGTGGACGATATCGACGGCATC GCTCCCGCGGTCGCGATCCGGCAGAAGAATACCACGCGCAATCCCCGCTCCACCGTCGCTACTTCCACGGAGTGCTTCGA TTTTCTGCGGCTGCTTTACGCCCGCGTTGGCCAGACCTTCTGTCCCACCTGCGGAACGCGCGTGATTAAGGACACCGTGG ATCAGGTCGCGGCCCGGGTGCTCCAGTATCCGCAGGGTTCGCGCTGGTATGCGCTCTTTCCCTGCGGCGAACACGCGTCT ACCGACGCCCTGCGGGACCACTTGTTCGAGCTTCGCAAGAAGGGCTTCAACCGTCTCTTCCAGGCGGGCCGGCTCTTCGA ATTCTCGACGCCGGAATCGCTGCTCGATATCGATTTCACCAAGCCGCTGTTCATTCTGGTGGATCGCATCGCGATTTCGC CCGACCTGCACCAGCGGCTGGTAGACTCCATCGAAATCTGCTACCGGGAAGCCGGCGAGGTGATTTTCGAAAACGCCTCG ACGGGCGAGCAGTTGCGCTTCAACGAACGCTTCCAGTGCAAAACGTGCCTGATGGAGTTCAACCCGCCGGAGCCGATTCT CTTCAGCTTCAATTCGCCTTTCGGGGCGTGCCCGCGCTGCCAGGGGTTCGGCAACACGATCGATTTCGACATGAACCGGG TGATCCCAGACCCCGGGCTCACGCTCGATGAAGGCGCGGTCGATCCGTGGACCAAGCCCAAGTACCGATCGTGGCTCGGC AATTTCAAGAAGCACCGCGCCAAGGTCCGCACGAACGTCCCCGTCTGCGACTTGACAGCGGCGGAGCGCGATACGCTCGA CGAGTTCATCCGCCGTTTCTTCGACCACCTGGAAACGAAAAAGTACAAGGTCCACGTTCGCGTCTTCCTCAGCCGCTACC GAGGTTACGCGCTGTGTCCCGATTGCAGGGGCGCGCGTCTTCGCAAGGAGGCCCTCTATGTGCGTGTCGCAGGCAGGAAT CTCGCCGATATCGTGCGCATGAATATCGCCGAGGCGCAGGAGTTTTTTCTTTCCCTCAGTCTCAGCCCCGAAGAAACCGC GATCGCCGAGAAGATTCTGGTGGAGATCCGCCAGCGCCTGAAATTCCTCAACGATGTCGGCCTGGAATATCTCACGCTGG ACCGGCTGGCCTCTACGCTTTCCGGCGGTGAAGCGCAGCGGATTCAGCTCGCGACTTCGCTCGGCTCGCGCCTAGTCGGC GCCTGTTACGTGCTGGATGAACCCTCCATCGGCCTGCACAGCCGCGACACCGGCCGGCTGATCCGCATTCTCGAGGAACT GCGCGGGCTCGGGAACACCATCGTGGTGGTGGAGCACGATCCGAACGTGATGCGCTCCGCCGACCACATCGTCGATCTCG GCCCCGGCGCGGGCGAGCATGGGGGCGAGATTGTCTTTGAGGGTAATCTTCCCACGCTGATCCAGAGCGGCGATTCGCTG ACCGCGAAATACCTGCGCGGCGAATTGAAGGTCTCGGCGCCGCGCGTGCGGCGCACCGTGGACCCGCGGCGCACGATGCG CTTCAACGGCGCGCGCGTGCACAATTTGAAGAACGTGGATGTCGAGATTCCGCTCGGGATGATGGTGGTGGTCACGGGCG TCTCCGGCTCCGGAAAATCCACGCTGGTACACGATGTAATCTACCGCTCGCTCGAAGCGCTTCACAAGGCACGAGACGCC CGCGACGATGGCGGCGCGACCGCCGAGCCCGAACTTGGCGACGCGCCGGGTCCGCAGCTCATGTGCCGCAAGGTGGAAGG CGCCGAGCGCATCAGCACGACCGTAATGATCGATCAATCGCCGATCGGCCGCACACCGCGCTCCAACCCGGTCACGTACA TCAAGGCCTTCGAACTGATCCGTGCGCTGTTCGCCTCCACCCGCGACGCCGAGAAGCGCGGCTACACCGCGGGACATTTT TCTTTTAATATCCCGGGCGGCCGCTGCGAAACCTGCCAGGGCGATGGCACCGTGACGGTGGAGATGCAGTTCCTGGCCGA CGTAGAGCTGATGTGCGAGGAATGCAAAGGCACGCGCTACAAGAGCGGGATTCTCGAGATCAAGTACAACGGCCGCAACA TCCACGAGGTGCTGCAGCTCACCGTTAGGGAGGCAATGGATTTCTTCCACGCCGCGCCCAAATTGGTGCAGCGGCTCAAG GTGCTCGACGATGTGGGCCTGGGGTATCTGCGGCTCGGACAATCGGCGACTACGCTCTCGGGCGGCGAGGCACAGCGCGT GAAACTCGCCGCGCATCTTTCCACGGCGAGCAATGCCGGTACGCTCTTCATCTGCGACGAGCCCACCACCGGGCTGCATT TCGACGATATCGCCAAGCTGCTGGCTGCATTCCAACGGCTGATTGAAAACGGCGGCAGCCTGGTGATTATCGAGCACAAC CTCGACGTGATCAAGGCTGCCGATTGGGTTATCGATCTGGGCCCGGAAGGCGGGTCGCGGGGCGGCCAGATCGTCGCTAC CGGTCCACCCGAAGTGATCGCTGTGGCTAAGGACTCCTACACCGGCCATTATCTGCGGGAAGTGTTGTAG
Upstream 100 bases:
>100_bases GCGCCGCGCGCTGGCGGCACGGACGGAGCGCCATGGTGCTTTTGCAAACGGGCGATCAATTTCTTGAAGTCCGGCATCCC TCGTTATAATAGAAGTTCCA
Downstream 100 bases:
>100_bases GGGGCACAGGACGCCGGCGGCGCGGTCGAAAACCTCACGGCTAACCGGAATACCGAGAAAAGCCAATTAGCAACCGCTCC CTTACGGTCGCGGCTCCGAA
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 929; Mature: 929
Protein sequence:
>929_residues MQDYIAIRGARVHNLKNISLCIPHNQLTVVTGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLERMEKPDVDDIDGI APAVAIRQKNTTRNPRSTVATSTECFDFLRLLYARVGQTFCPTCGTRVIKDTVDQVAARVLQYPQGSRWYALFPCGEHAS TDALRDHLFELRKKGFNRLFQAGRLFEFSTPESLLDIDFTKPLFILVDRIAISPDLHQRLVDSIEICYREAGEVIFENAS TGEQLRFNERFQCKTCLMEFNPPEPILFSFNSPFGACPRCQGFGNTIDFDMNRVIPDPGLTLDEGAVDPWTKPKYRSWLG NFKKHRAKVRTNVPVCDLTAAERDTLDEFIRRFFDHLETKKYKVHVRVFLSRYRGYALCPDCRGARLRKEALYVRVAGRN LADIVRMNIAEAQEFFLSLSLSPEETAIAEKILVEIRQRLKFLNDVGLEYLTLDRLASTLSGGEAQRIQLATSLGSRLVG ACYVLDEPSIGLHSRDTGRLIRILEELRGLGNTIVVVEHDPNVMRSADHIVDLGPGAGEHGGEIVFEGNLPTLIQSGDSL TAKYLRGELKVSAPRVRRTVDPRRTMRFNGARVHNLKNVDVEIPLGMMVVVTGVSGSGKSTLVHDVIYRSLEALHKARDA RDDGGATAEPELGDAPGPQLMCRKVEGAERISTTVMIDQSPIGRTPRSNPVTYIKAFELIRALFASTRDAEKRGYTAGHF SFNIPGGRCETCQGDGTVTVEMQFLADVELMCEECKGTRYKSGILEIKYNGRNIHEVLQLTVREAMDFFHAAPKLVQRLK VLDDVGLGYLRLGQSATTLSGGEAQRVKLAAHLSTASNAGTLFICDEPTTGLHFDDIAKLLAAFQRLIENGGSLVIIEHN LDVIKAADWVIDLGPEGGSRGGQIVATGPPEVIAVAKDSYTGHYLREVL
Sequences:
>Translated_929_residues MQDYIAIRGARVHNLKNISLCIPHNQLTVVTGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLERMEKPDVDDIDGI APAVAIRQKNTTRNPRSTVATSTECFDFLRLLYARVGQTFCPTCGTRVIKDTVDQVAARVLQYPQGSRWYALFPCGEHAS TDALRDHLFELRKKGFNRLFQAGRLFEFSTPESLLDIDFTKPLFILVDRIAISPDLHQRLVDSIEICYREAGEVIFENAS TGEQLRFNERFQCKTCLMEFNPPEPILFSFNSPFGACPRCQGFGNTIDFDMNRVIPDPGLTLDEGAVDPWTKPKYRSWLG NFKKHRAKVRTNVPVCDLTAAERDTLDEFIRRFFDHLETKKYKVHVRVFLSRYRGYALCPDCRGARLRKEALYVRVAGRN LADIVRMNIAEAQEFFLSLSLSPEETAIAEKILVEIRQRLKFLNDVGLEYLTLDRLASTLSGGEAQRIQLATSLGSRLVG ACYVLDEPSIGLHSRDTGRLIRILEELRGLGNTIVVVEHDPNVMRSADHIVDLGPGAGEHGGEIVFEGNLPTLIQSGDSL TAKYLRGELKVSAPRVRRTVDPRRTMRFNGARVHNLKNVDVEIPLGMMVVVTGVSGSGKSTLVHDVIYRSLEALHKARDA RDDGGATAEPELGDAPGPQLMCRKVEGAERISTTVMIDQSPIGRTPRSNPVTYIKAFELIRALFASTRDAEKRGYTAGHF SFNIPGGRCETCQGDGTVTVEMQFLADVELMCEECKGTRYKSGILEIKYNGRNIHEVLQLTVREAMDFFHAAPKLVQRLK VLDDVGLGYLRLGQSATTLSGGEAQRVKLAAHLSTASNAGTLFICDEPTTGLHFDDIAKLLAAFQRLIENGGSLVIIEHN LDVIKAADWVIDLGPEGGSRGGQIVATGPPEVIAVAKDSYTGHYLREVL >Mature_929_residues MQDYIAIRGARVHNLKNISLCIPHNQLTVVTGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLERMEKPDVDDIDGI APAVAIRQKNTTRNPRSTVATSTECFDFLRLLYARVGQTFCPTCGTRVIKDTVDQVAARVLQYPQGSRWYALFPCGEHAS TDALRDHLFELRKKGFNRLFQAGRLFEFSTPESLLDIDFTKPLFILVDRIAISPDLHQRLVDSIEICYREAGEVIFENAS TGEQLRFNERFQCKTCLMEFNPPEPILFSFNSPFGACPRCQGFGNTIDFDMNRVIPDPGLTLDEGAVDPWTKPKYRSWLG NFKKHRAKVRTNVPVCDLTAAERDTLDEFIRRFFDHLETKKYKVHVRVFLSRYRGYALCPDCRGARLRKEALYVRVAGRN LADIVRMNIAEAQEFFLSLSLSPEETAIAEKILVEIRQRLKFLNDVGLEYLTLDRLASTLSGGEAQRIQLATSLGSRLVG ACYVLDEPSIGLHSRDTGRLIRILEELRGLGNTIVVVEHDPNVMRSADHIVDLGPGAGEHGGEIVFEGNLPTLIQSGDSL TAKYLRGELKVSAPRVRRTVDPRRTMRFNGARVHNLKNVDVEIPLGMMVVVTGVSGSGKSTLVHDVIYRSLEALHKARDA RDDGGATAEPELGDAPGPQLMCRKVEGAERISTTVMIDQSPIGRTPRSNPVTYIKAFELIRALFASTRDAEKRGYTAGHF SFNIPGGRCETCQGDGTVTVEMQFLADVELMCEECKGTRYKSGILEIKYNGRNIHEVLQLTVREAMDFFHAAPKLVQRLK VLDDVGLGYLRLGQSATTLSGGEAQRVKLAAHLSTASNAGTLFICDEPTTGLHFDDIAKLLAAFQRLIENGGSLVIIEHN LDVIKAADWVIDLGPEGGSRGGQIVATGPPEVIAVAKDSYTGHYLREVL
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=964, Percent_Identity=48.4439834024896, Blast_Score=823, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 103174; Mature: 103174
Theoretical pI: Translated: 7.28; Mature: 7.28
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDYIAIRGARVHNLKNISLCIPHNQLTVVTGVSGSGKSSLAFDTIYAEGQRRYVESLSA CCCCEEECCCEEECCCEEEEEECCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHH YARQFLERMEKPDVDDIDGIAPAVAIRQKNTTRNPRSTVATSTECFDFLRLLYARVGQTF HHHHHHHHHCCCCCCCCCCCCHHHEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCC CPTCGTRVIKDTVDQVAARVLQYPQGSRWYALFPCGEHASTDALRDHLFELRKKGFNRLF CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH QAGRLFEFSTPESLLDIDFTKPLFILVDRIAISPDLHQRLVDSIEICYREAGEVIFENAS HCCCEEECCCCCHHEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEECCC TGEQLRFNERFQCKTCLMEFNPPEPILFSFNSPFGACPRCQGFGNTIDFDMNRVIPDPGL CCCCCCCCCCCEEEHHHEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TLDEGAVDPWTKPKYRSWLGNFKKHRAKVRTNVPVCDLTAAERDTLDEFIRRFFDHLETK CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHCCC KYKVHVRVFLSRYRGYALCPDCRGARLRKEALYVRVAGRNLADIVRMNIAEAQEFFLSLS CEEEHHHHHHHHHCCCEECCCCCCCHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHEEEC LSPEETAIAEKILVEIRQRLKFLNDVGLEYLTLDRLASTLSGGEAQRIQLATSLGSRLVG CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHE ACYVLDEPSIGLHSRDTGRLIRILEELRGLGNTIVVVEHDPNVMRSADHIVDLGPGAGEH EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCEEECCCCCCCC GGEIVFEGNLPTLIQSGDSLTAKYLRGELKVSAPRVRRTVDPRRTMRFNGARVHNLKNVD CCEEEEECCCCHHHCCCCCHHHHHHHCCCEECCHHHHHCCCHHHHEEECCCEEECCCCCE VEIPLGMMVVVTGVSGSGKSTLVHDVIYRSLEALHKARDARDDGGATAEPELGDAPGPQL EECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH MCRKVEGAERISTTVMIDQSPIGRTPRSNPVTYIKAFELIRALFASTRDAEKRGYTAGHF HHHHCCCHHHEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCEECEE SFNIPGGRCETCQGDGTVTVEMQFLADVELMCEECKGTRYKSGILEIKYNGRNIHEVLQL EEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCEECCCEEEEEECCCCHHHHHHH TVREAMDFFHAAPKLVQRLKVLDDVGLGYLRLGQSATTLSGGEAQRVKLAAHLSTASNAG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCC TLFICDEPTTGLHFDDIAKLLAAFQRLIENGGSLVIIEHNLDVIKAADWVIDLGPEGGSR EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCEEEEECCCCCCC GGQIVATGPPEVIAVAKDSYTGHYLREVL CCEEEECCCCCEEEEECCCCCHHHHHHHC >Mature Secondary Structure MQDYIAIRGARVHNLKNISLCIPHNQLTVVTGVSGSGKSSLAFDTIYAEGQRRYVESLSA CCCCEEECCCEEECCCEEEEEECCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHH YARQFLERMEKPDVDDIDGIAPAVAIRQKNTTRNPRSTVATSTECFDFLRLLYARVGQTF HHHHHHHHHCCCCCCCCCCCCHHHEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCC CPTCGTRVIKDTVDQVAARVLQYPQGSRWYALFPCGEHASTDALRDHLFELRKKGFNRLF CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH QAGRLFEFSTPESLLDIDFTKPLFILVDRIAISPDLHQRLVDSIEICYREAGEVIFENAS HCCCEEECCCCCHHEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEECCC TGEQLRFNERFQCKTCLMEFNPPEPILFSFNSPFGACPRCQGFGNTIDFDMNRVIPDPGL CCCCCCCCCCCEEEHHHEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TLDEGAVDPWTKPKYRSWLGNFKKHRAKVRTNVPVCDLTAAERDTLDEFIRRFFDHLETK CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHCCC KYKVHVRVFLSRYRGYALCPDCRGARLRKEALYVRVAGRNLADIVRMNIAEAQEFFLSLS CEEEHHHHHHHHHCCCEECCCCCCCHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHEEEC LSPEETAIAEKILVEIRQRLKFLNDVGLEYLTLDRLASTLSGGEAQRIQLATSLGSRLVG CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHE ACYVLDEPSIGLHSRDTGRLIRILEELRGLGNTIVVVEHDPNVMRSADHIVDLGPGAGEH EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCEEECCCCCCCC GGEIVFEGNLPTLIQSGDSLTAKYLRGELKVSAPRVRRTVDPRRTMRFNGARVHNLKNVD CCEEEEECCCCHHHCCCCCHHHHHHHCCCEECCHHHHHCCCHHHHEEECCCEEECCCCCE VEIPLGMMVVVTGVSGSGKSTLVHDVIYRSLEALHKARDARDDGGATAEPELGDAPGPQL EECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH MCRKVEGAERISTTVMIDQSPIGRTPRSNPVTYIKAFELIRALFASTRDAEKRGYTAGHF HHHHCCCHHHEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCEECEE SFNIPGGRCETCQGDGTVTVEMQFLADVELMCEECKGTRYKSGILEIKYNGRNIHEVLQL EEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCEECCCEEEEEECCCCHHHHHHH TVREAMDFFHAAPKLVQRLKVLDDVGLGYLRLGQSATTLSGGEAQRVKLAAHLSTASNAG HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCC TLFICDEPTTGLHFDDIAKLLAAFQRLIENGGSLVIIEHNLDVIKAADWVIDLGPEGGSR EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCEEEEECCCCCCC GGQIVATGPPEVIAVAKDSYTGHYLREVL CCEEEECCCCCEEEEECCCCCHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12552129 [H]