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The map label for this gene is 116625400

Identifier: 116625400

GI number: 116625400

Start: 7963876

End: 7964838

Strand: Direct

Name: 116625400

Synonym: Acid_6345

Alternate gene names: NA

Gene position: 7963876-7964838 (Clockwise)

Preceding gene: 116625399

Following gene: 116625402

Centisome position: 79.91

GC content: 63.66

Gene sequence:

>963_bases
ATGGCACTTGTGGGGATCGCACGCCTGGCTTCCCAGAGCGAACTGCTCGAAGCCAAGCGCAGCGTGGAGTATTTCGAGAT
TCCGGCGCGGAGCATTTTGAACCGCACCAAGCCCAACATGCCGTTTCGCTGGACCATCAACCCTTACCGGGGCTGCGAAA
TTGGCTGCAAGTATTGCTATGCGCGCTACGCCCATGAATTTATGGAGCTGGAGCCGGAGAGTTTCGAGGACAAAATTTAT
GCCAAGGCAGCGCCCGCCCACCTGCTGCGGCAGGAACTGGGGCGCGTGCAGAATAAGGATGAAGGCATCGCCATCGGGAC
GGCGACAGATCCTTACCAGCCCGCCGAGCGGCGCTTCCTGCGGACGCGCTCCATCCTCGAAGTCTTCGCGAAGGAACGCG
GCTGGCACATTGGACTGATCAGCAAGAGCGACCTGATCGTGCGCGATCTCGACCTGTTGCGCGAGATCTCACGCCGCAAT
GTACTGAGCGTGCACATCACGGTCACCACCGTCGATGAAAAACTGGCGCGCCTGCTGGAGCCGCGCGCGCCGCGTCCGGA
ACTCCGGCTGCAGGCCGTGCAGCAGCTGCGCTCCGCCGGTGTGGCGGTGGGCGTCAATCCCAACCCGATCATGCCCGGGA
TTACCGATTCCGACAGCTCGCTCGATTGCGTCGCGCGCGCCGCCCGCGATCATGGCGCGATGACGTTCGGCGGCGGCGCG
CTTTACCTGCCGGGGGCCGCGCAGAAGGTCTTCTTCCCGTTCCTGGAGCAGGAGTTCCCGCACCTCGCCGCGCGTTATCG
CGAAACCTTCGAGAACAACATCCACCTCAGCCGCGCGTACAAAGACGCGCTCGCCGAACGCGTGGCACGGATCCGCGAGC
GCTACGGACTGGCCGGGGGGCACATCGAATACCGTCCGGAGCTGTGGGCCGAGGAGGAGCAGCTGGAGTTGTTTCCCTTG
TAG

Upstream 100 bases:

>100_bases
CGGCGTTACCGCTTCGGACCCGCCGAGTGGCTTTGGCGTTCGCTTACTTATGGCCGAATTTTTCCCTTGCGCAGAGGCGA
ATAAAAGGCGAATATGGGGT

Downstream 100 bases:

>100_bases
TCGGGTGACCGCGAGATTGAATGCGAATTACCCACCGCTTGGCTGACGCGAGCGGCTCGGAACGGAGGGGTTGATGATAG
AAAGCACGAAGCGGAGTCAG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MALVGIARLASQSELLEAKRSVEYFEIPARSILNRTKPNMPFRWTINPYRGCEIGCKYCYARYAHEFMELEPESFEDKIY
AKAAPAHLLRQELGRVQNKDEGIAIGTATDPYQPAERRFLRTRSILEVFAKERGWHIGLISKSDLIVRDLDLLREISRRN
VLSVHITVTTVDEKLARLLEPRAPRPELRLQAVQQLRSAGVAVGVNPNPIMPGITDSDSSLDCVARAARDHGAMTFGGGA
LYLPGAAQKVFFPFLEQEFPHLAARYRETFENNIHLSRAYKDALAERVARIRERYGLAGGHIEYRPELWAEEEQLELFPL

Sequences:

>Translated_320_residues
MALVGIARLASQSELLEAKRSVEYFEIPARSILNRTKPNMPFRWTINPYRGCEIGCKYCYARYAHEFMELEPESFEDKIY
AKAAPAHLLRQELGRVQNKDEGIAIGTATDPYQPAERRFLRTRSILEVFAKERGWHIGLISKSDLIVRDLDLLREISRRN
VLSVHITVTTVDEKLARLLEPRAPRPELRLQAVQQLRSAGVAVGVNPNPIMPGITDSDSSLDCVARAARDHGAMTFGGGA
LYLPGAAQKVFFPFLEQEFPHLAARYRETFENNIHLSRAYKDALAERVARIRERYGLAGGHIEYRPELWAEEEQLELFPL
>Mature_319_residues
ALVGIARLASQSELLEAKRSVEYFEIPARSILNRTKPNMPFRWTINPYRGCEIGCKYCYARYAHEFMELEPESFEDKIYA
KAAPAHLLRQELGRVQNKDEGIAIGTATDPYQPAERRFLRTRSILEVFAKERGWHIGLISKSDLIVRDLDLLREISRRNV
LSVHITVTTVDEKLARLLEPRAPRPELRLQAVQQLRSAGVAVGVNPNPIMPGITDSDSSLDCVARAARDHGAMTFGGGAL
YLPGAAQKVFFPFLEQEFPHLAARYRETFENNIHLSRAYKDALAERVARIRERYGLAGGHIEYRPELWAEEEQLELFPL

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 36402; Mature: 36271

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALVGIARLASQSELLEAKRSVEYFEIPARSILNRTKPNMPFRWTINPYRGCEIGCKYCY
CCHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHH
ARYAHEFMELEPESFEDKIYAKAAPAHLLRQELGRVQNKDEGIAIGTATDPYQPAERRFL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHH
RTRSILEVFAKERGWHIGLISKSDLIVRDLDLLREISRRNVLSVHITVTTVDEKLARLLE
HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEEEEEHHHHHHHHHC
PRAPRPELRLQAVQQLRSAGVAVGVNPNPIMPGITDSDSSLDCVARAARDHGAMTFGGGA
CCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCE
LYLPGAAQKVFFPFLEQEFPHLAARYRETFENNIHLSRAYKDALAERVARIRERYGLAGG
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
HIEYRPELWAEEEQLELFPL
CEEECCCCCCCCCCEEECCC
>Mature Secondary Structure 
ALVGIARLASQSELLEAKRSVEYFEIPARSILNRTKPNMPFRWTINPYRGCEIGCKYCY
CHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHH
ARYAHEFMELEPESFEDKIYAKAAPAHLLRQELGRVQNKDEGIAIGTATDPYQPAERRFL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHH
RTRSILEVFAKERGWHIGLISKSDLIVRDLDLLREISRRNVLSVHITVTTVDEKLARLLE
HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEEEEEHHHHHHHHHC
PRAPRPELRLQAVQQLRSAGVAVGVNPNPIMPGITDSDSSLDCVARAARDHGAMTFGGGA
CCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCE
LYLPGAAQKVFFPFLEQEFPHLAARYRETFENNIHLSRAYKDALAERVARIRERYGLAGG
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
HIEYRPELWAEEEQLELFPL
CEEECCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]