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The map label for this gene is soxS [C]

Identifier: 116625299

GI number: 116625299

Start: 7826146

End: 7826514

Strand: Reverse

Name: soxS [C]

Synonym: Acid_6244

Alternate gene names: 116625299

Gene position: 7826514-7826146 (Counterclockwise)

Preceding gene: 116625300

Following gene: 116625298

Centisome position: 78.53

GC content: 59.35

Gene sequence:

>369_bases
TTGCGGGATTGGGAGGACGAGCCGCTTTCGGTGAGTGCGGTGGCTCGAGCCTCGGGGCTCTCGAGCTTTCATTTCATCCG
GTTGTTCAAGGCCATGTTTGGCGAAACTCCGAACCAGTATCGCTCACGCGCGCAGATCGAAAAAGCCAAGCACCTGCTGA
TCCTGACCGATCTTTCGATCACGGATGTTTGCATGTCGGTCGGTCTCTCAAGTGTGGGTAGCTTCAGCACGCTGTTCCTG
CGTCGTGTGGGCATGCCGCCGTCGGAATTTCAACGGCGGTACCGGTCCGCATCGTTGGCGGAACGGCAGTTGCCGGAGCG
CTTGATCCCCGGCTGCCTCTCGCTAATGGCTGGAATTCCCGGGAGATAG

Upstream 100 bases:

>100_bases
ATTTGAAGCCGTACTAGATATACGTACTAGATATAATTGTTGTCCTGAAAAGATGATCCACCCAGAACTTCTCAGCCGGC
TCTGCCATGCGCGGGATCTA

Downstream 100 bases:

>100_bases
CAATTTTCGAGAAGACAGGCCGCGGCCGAGGCTGATAAATTCTGAGGCTATGAAGATAAAACTCAGCAGCATCATGGTCG
AGAATCAGGCAACTGCGCTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC-Family Transcriptional Regulator; AraC/XylS Family Transcriptional Regulator; AraC Family Transcription Regulator; AraC Type Helix-Turn-Helix- Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein; Transcriptional Regulator AraC-Type; Two-Component Response Regulator; DJ-1/PfpI Family; Two Component Transcriptional Regulator AraC Family; Xre Family xin-Antitoxin System Antitoxin Component; Helix-Turn-Helix- Domain Containing Protein AraC Type; Arac Family Transcriptional Regulator; Regulatory Protein PocR; Transcriptional Regulator AraC Family Isolated Domain

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MRDWEDEPLSVSAVARASGLSSFHFIRLFKAMFGETPNQYRSRAQIEKAKHLLILTDLSITDVCMSVGLSSVGSFSTLFL
RRVGMPPSEFQRRYRSASLAERQLPERLIPGCLSLMAGIPGR

Sequences:

>Translated_122_residues
MRDWEDEPLSVSAVARASGLSSFHFIRLFKAMFGETPNQYRSRAQIEKAKHLLILTDLSITDVCMSVGLSSVGSFSTLFL
RRVGMPPSEFQRRYRSASLAERQLPERLIPGCLSLMAGIPGR
>Mature_122_residues
MRDWEDEPLSVSAVARASGLSSFHFIRLFKAMFGETPNQYRSRAQIEKAKHLLILTDLSITDVCMSVGLSSVGSFSTLFL
RRVGMPPSEFQRRYRSASLAERQLPERLIPGCLSLMAGIPGR

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13648; Mature: 13648

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDWEDEPLSVSAVARASGLSSFHFIRLFKAMFGETPNQYRSRAQIEKAKHLLILTDLSI
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCHH
TDVCMSVGLSSVGSFSTLFLRRVGMPPSEFQRRYRSASLAERQLPERLIPGCLSLMAGIP
HHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GR
CC
>Mature Secondary Structure
MRDWEDEPLSVSAVARASGLSSFHFIRLFKAMFGETPNQYRSRAQIEKAKHLLILTDLSI
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCHH
TDVCMSVGLSSVGSFSTLFLRRVGMPPSEFQRRYRSASLAERQLPERLIPGCLSLMAGIP
HHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA