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The map label for this gene is rfbA [H]

Identifier: 116625289

GI number: 116625289

Start: 7812933

End: 7814165

Strand: Direct

Name: rfbA [H]

Synonym: Acid_6234

Alternate gene names: 116625289

Gene position: 7812933-7814165 (Clockwise)

Preceding gene: 116625288

Following gene: 116625290

Centisome position: 78.4

GC content: 63.42

Gene sequence:

>1233_bases
ATGAACGCCGCCTATCTCGAGCCCGCCGTCAAGCTCGATGCCGGCGCTCGCACGGTGCATGCCGATTTCCTGATCCGCAA
CGATTCCGAAGAGACCTGGCGTCCCTCCGAAGGCTTCGGCGTCGGCTACCACCTTTTCGATGCCGAAACCGGCACCTTGA
TCGTCGATGGCGCCCGCGCTCATCCCGACGGCGACGTGAAGCCCGGCGGCCAAACGCGGATCCATCTGGATTTCGAAATC
CCCGCTGAGGATGGCGATTACCAGGTCTTCCTCTCCCCGATGCGCGAGAACGTCTGCTGGTATTACGAACGCGCCTGGCC
CTTCCTGCTCGTCGAAGCTACTACCCGCGATGGCGTAGTGACCCTCGGCCGCGTCACGGTCGCCACCCGTGCCACGCTGG
CTCGCGAACACGCCTTTCGCGGCTTCGGCCGCGCCCTCACGCTCCCCTTCCAAACCATCGCGCGCAATCGCGGCCTGATC
CGCGCCATGGTGCGGCGCGACATCCTCGGCCGCTACCGCGGCTCCTTCGGCGGAGCCTTCTGGACCATCATCAACCCGCT
GCTGTTGATGCTCACATATTTCTTCGTCTTCGGCATTGTGCTCGAATCGCGCTTCAGCGATGGCGATACCAGCCGCACGG
GCTTCGCCCTCTCTTTCCTCGCCGGCATGCTCCCGTGGCTTGCCTTCAGCGAGGCGGCCGGACGCGCGCCAAGCGTCATG
CTCGAGCACCGCAATTTCGTCAAGAAACTCGTCTTCGCCGTCGAGACCTTGCCCGTCAACCTGGTCGCCGCCGGACTCAT
CACCGAGATCTTCGCCGTCGCCCTTTATTGCGGCTTCCTGCTCGCCATCCGCCACGCCCTTCCGGCGTCGATCCTCTGGC
TGCCGCTGCTCCTGATCCCCCAGCTTCTCTTCACCGCCGGCCTCAGCTGGTTCCTGGCCGCTCTCGGCGTCTTCGTCCGC
GACCTCGGCCAGATCATGGGCTTCATACTCACCCTCTGGTTCTTCCTCACCCCCATCTGTTATCCCGAGACCAAACTCCA
CGGCCCTTCCGCCGCCATCCTGATGAAGAACCCGATCTTCACCCTGGTCCACGGCTATCGCGCCATCTTCCTCCAGAACC
ACGCGCCTGATTTCGATTCCCTCTGGAAGTTCTGGCTCCTCGCCATCGCAGTCTTCCTCACCGGCCACGCCTGGTTCTAC
AAACTCCGTAAATCCTTCCCCGACCTCCTGTAA

Upstream 100 bases:

>100_bases
AGCGCTACCGCCTCGGCACAGACCTTCGGGGCGACGGCATCTACGCCGTCGGCCGCAAAACCGGCCCTGTCCGCGAACGC
TATCCCGGCTGGCTCTACTC

Downstream 100 bases:

>100_bases
GATAGGCCTCCCGGCAGCCTCCTGGCCTGCCGCGAAGTCTCCAGTTTCACCGGAAAAAGCATTTCTTCTCGCAAAGGCGC
AAAGGCCGCAAAGAAACCAA

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MNAAYLEPAVKLDAGARTVHADFLIRNDSEETWRPSEGFGVGYHLFDAETGTLIVDGARAHPDGDVKPGGQTRIHLDFEI
PAEDGDYQVFLSPMRENVCWYYERAWPFLLVEATTRDGVVTLGRVTVATRATLAREHAFRGFGRALTLPFQTIARNRGLI
RAMVRRDILGRYRGSFGGAFWTIINPLLLMLTYFFVFGIVLESRFSDGDTSRTGFALSFLAGMLPWLAFSEAAGRAPSVM
LEHRNFVKKLVFAVETLPVNLVAAGLITEIFAVALYCGFLLAIRHALPASILWLPLLLIPQLLFTAGLSWFLAALGVFVR
DLGQIMGFILTLWFFLTPICYPETKLHGPSAAILMKNPIFTLVHGYRAIFLQNHAPDFDSLWKFWLLAIAVFLTGHAWFY
KLRKSFPDLL

Sequences:

>Translated_410_residues
MNAAYLEPAVKLDAGARTVHADFLIRNDSEETWRPSEGFGVGYHLFDAETGTLIVDGARAHPDGDVKPGGQTRIHLDFEI
PAEDGDYQVFLSPMRENVCWYYERAWPFLLVEATTRDGVVTLGRVTVATRATLAREHAFRGFGRALTLPFQTIARNRGLI
RAMVRRDILGRYRGSFGGAFWTIINPLLLMLTYFFVFGIVLESRFSDGDTSRTGFALSFLAGMLPWLAFSEAAGRAPSVM
LEHRNFVKKLVFAVETLPVNLVAAGLITEIFAVALYCGFLLAIRHALPASILWLPLLLIPQLLFTAGLSWFLAALGVFVR
DLGQIMGFILTLWFFLTPICYPETKLHGPSAAILMKNPIFTLVHGYRAIFLQNHAPDFDSLWKFWLLAIAVFLTGHAWFY
KLRKSFPDLL
>Mature_410_residues
MNAAYLEPAVKLDAGARTVHADFLIRNDSEETWRPSEGFGVGYHLFDAETGTLIVDGARAHPDGDVKPGGQTRIHLDFEI
PAEDGDYQVFLSPMRENVCWYYERAWPFLLVEATTRDGVVTLGRVTVATRATLAREHAFRGFGRALTLPFQTIARNRGLI
RAMVRRDILGRYRGSFGGAFWTIINPLLLMLTYFFVFGIVLESRFSDGDTSRTGFALSFLAGMLPWLAFSEAAGRAPSVM
LEHRNFVKKLVFAVETLPVNLVAAGLITEIFAVALYCGFLLAIRHALPASILWLPLLLIPQLLFTAGLSWFLAALGVFVR
DLGQIMGFILTLWFFLTPICYPETKLHGPSAAILMKNPIFTLVHGYRAIFLQNHAPDFDSLWKFWLLAIAVFLTGHAWFY
KLRKSFPDLL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 45983; Mature: 45983

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAAYLEPAVKLDAGARTVHADFLIRNDSEETWRPSEGFGVGYHLFDAETGTLIVDGARA
CCCCCCCCCCEECCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCC
HPDGDVKPGGQTRIHLDFEIPAEDGDYQVFLSPMRENVCWYYERAWPFLLVEATTRDGVV
CCCCCCCCCCCEEEEEEEEECCCCCCEEEEECHHHCCCEEEEECCCCEEEEEECCCCCEE
TLGRVTVATRATLAREHAFRGFGRALTLPFQTIARNRGLIRAMVRRDILGRYRGSFGGAF
EEHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHH
WTIINPLLLMLTYFFVFGIVLESRFSDGDTSRTGFALSFLAGMLPWLAFSEAAGRAPSVM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LEHRNFVKKLVFAVETLPVNLVAAGLITEIFAVALYCGFLLAIRHALPASILWLPLLLIP
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
QLLFTAGLSWFLAALGVFVRDLGQIMGFILTLWFFLTPICYPETKLHGPSAAILMKNPIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHH
TLVHGYRAIFLQNHAPDFDSLWKFWLLAIAVFLTGHAWFYKLRKSFPDLL
HHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNAAYLEPAVKLDAGARTVHADFLIRNDSEETWRPSEGFGVGYHLFDAETGTLIVDGARA
CCCCCCCCCCEECCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCC
HPDGDVKPGGQTRIHLDFEIPAEDGDYQVFLSPMRENVCWYYERAWPFLLVEATTRDGVV
CCCCCCCCCCCEEEEEEEEECCCCCCEEEEECHHHCCCEEEEECCCCEEEEEECCCCCEE
TLGRVTVATRATLAREHAFRGFGRALTLPFQTIARNRGLIRAMVRRDILGRYRGSFGGAF
EEHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHH
WTIINPLLLMLTYFFVFGIVLESRFSDGDTSRTGFALSFLAGMLPWLAFSEAAGRAPSVM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LEHRNFVKKLVFAVETLPVNLVAAGLITEIFAVALYCGFLLAIRHALPASILWLPLLLIP
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
QLLFTAGLSWFLAALGVFVRDLGQIMGFILTLWFFLTPICYPETKLHGPSAAILMKNPIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHH
TLVHGYRAIFLQNHAPDFDSLWKFWLLAIAVFLTGHAWFYKLRKSFPDLL
HHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]