Click here to switch to the map view.

The map label for this gene is 116625214

Identifier: 116625214

GI number: 116625214

Start: 7705193

End: 7706074

Strand: Reverse

Name: 116625214

Synonym: Acid_6159

Alternate gene names: NA

Gene position: 7706074-7705193 (Counterclockwise)

Preceding gene: 116625215

Following gene: 116625211

Centisome position: 77.33

GC content: 61.79

Gene sequence:

>882_bases
ATGCCGCATACCAGAAGGGATTTCGGAAAGCTGGCGCTCAGCGCCCTGCCGCTCGCGGTCGCGCGCGCCGCCGGAATCGA
CTCGAAGTTTTACGGCGTACAGATCGGCGCCATTACTTACAGCTTCAACCGCATCGCCGGCCCCGATCCGGAGGCGATCG
TCCGCGCCTATGTCGAAATTGGGCTCGGCGAGGCCGAGCTCATGTCCAATCACTGTGAGGCCGGCGCTCCCCGGCGCGAG
CAGCAGGAAGAACTTCGCGTATGGCGCGCCGCGGCCGGACCCGGCGCCTGGCAGGCCGTTCGCAGGAAGTTCAACGATGC
CGGAATTGAGTTGGCGGTCCTCTGCTACAACATGAACGACAGGATGAAGGAGGAAGATATCGAGTACGGCTTCTCCATGG
CCGCGGGTCTCGGCGTGCGCGCCATCAGCACCAGCACTACGCTCACCATGGCCCGGCGGATTGCGCCGGTCGCCGACCGC
CATAAGCTGCTGGTCGGCTATCACGGCCACGACGCCACGAACGATCCCAACCAGACCGCGACGCTGGAAAGCTACGACAT
TCTGATGGGATACGGAAAGTACAGCGGCGTCAACCTCGATATCGGCCACTTCACGGCAGCCAACTATGACGCCGTGGAAT
TCATCCGGAAGCACCATGCCCGCATCACCAACCTCCACGTCAAGGATATGAAGCGCGATCACGGCGCCTACACGCCGTTC
GGCGAAGGCGACACGCCGATGAAGGGGGTGCTCCAGTTGTTGAAGAAGGAGAAATACGACTTTCCGGCCAACATCGAGCT
GGAGTATGCCATCCCGCCGGGATCAGACCTGATCGCCGAAATGAAGAAGTGCCTCGCCTATTGCAAATCGTGTCGGGCGT
AG

Upstream 100 bases:

>100_bases
GCCCACCTCACCTGGCAGTAACCCTGGCAGTACCGAATCGATCGGCGGCGCGGCCACCATGGTCGCGCCGCGTCGAGAGA
TTGCGGGTACACTTCTAGCT

Downstream 100 bases:

>100_bases
GACGGGCCTCCCGGCCTGTGCTCCGCCCCCCGAACGGACACCTTCGTCAAACCGCATACCCCAATCAGCGATCTCACACC
ACCCGGTTCTCGGTTGCTAT

Product: xylose isomerase domain-containing protein

Products: NA

Alternate protein names: Xylose Isomerase Domain Protein TIM Barrel; 16S RRNA-Processing Protein; Xylose Isomerase Domain-Containing Protein TIM Barrel

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MPHTRRDFGKLALSALPLAVARAAGIDSKFYGVQIGAITYSFNRIAGPDPEAIVRAYVEIGLGEAELMSNHCEAGAPRRE
QQEELRVWRAAAGPGAWQAVRRKFNDAGIELAVLCYNMNDRMKEEDIEYGFSMAAGLGVRAISTSTTLTMARRIAPVADR
HKLLVGYHGHDATNDPNQTATLESYDILMGYGKYSGVNLDIGHFTAANYDAVEFIRKHHARITNLHVKDMKRDHGAYTPF
GEGDTPMKGVLQLLKKEKYDFPANIELEYAIPPGSDLIAEMKKCLAYCKSCRA

Sequences:

>Translated_293_residues
MPHTRRDFGKLALSALPLAVARAAGIDSKFYGVQIGAITYSFNRIAGPDPEAIVRAYVEIGLGEAELMSNHCEAGAPRRE
QQEELRVWRAAAGPGAWQAVRRKFNDAGIELAVLCYNMNDRMKEEDIEYGFSMAAGLGVRAISTSTTLTMARRIAPVADR
HKLLVGYHGHDATNDPNQTATLESYDILMGYGKYSGVNLDIGHFTAANYDAVEFIRKHHARITNLHVKDMKRDHGAYTPF
GEGDTPMKGVLQLLKKEKYDFPANIELEYAIPPGSDLIAEMKKCLAYCKSCRA
>Mature_292_residues
PHTRRDFGKLALSALPLAVARAAGIDSKFYGVQIGAITYSFNRIAGPDPEAIVRAYVEIGLGEAELMSNHCEAGAPRREQ
QEELRVWRAAAGPGAWQAVRRKFNDAGIELAVLCYNMNDRMKEEDIEYGFSMAAGLGVRAISTSTTLTMARRIAPVADRH
KLLVGYHGHDATNDPNQTATLESYDILMGYGKYSGVNLDIGHFTAANYDAVEFIRKHHARITNLHVKDMKRDHGAYTPFG
EGDTPMKGVLQLLKKEKYDFPANIELEYAIPPGSDLIAEMKKCLAYCKSCRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32383; Mature: 32252

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHTRRDFGKLALSALPLAVARAAGIDSKFYGVQIGAITYSFNRIAGPDPEAIVRAYVEI
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHH
GLGEAELMSNHCEAGAPRREQQEELRVWRAAAGPGAWQAVRRKFNDAGIELAVLCYNMND
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCC
RMKEEDIEYGFSMAAGLGVRAISTSTTLTMARRIAPVADRHKLLVGYHGHDATNDPNQTA
CCCHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCE
TLESYDILMGYGKYSGVNLDIGHFTAANYDAVEFIRKHHARITNLHVKDMKRDHGAYTPF
EEEEEEEEEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
GEGDTPMKGVLQLLKKEKYDFPANIELEYAIPPGSDLIAEMKKCLAYCKSCRA
CCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PHTRRDFGKLALSALPLAVARAAGIDSKFYGVQIGAITYSFNRIAGPDPEAIVRAYVEI
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHH
GLGEAELMSNHCEAGAPRREQQEELRVWRAAAGPGAWQAVRRKFNDAGIELAVLCYNMND
CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCC
RMKEEDIEYGFSMAAGLGVRAISTSTTLTMARRIAPVADRHKLLVGYHGHDATNDPNQTA
CCCHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCE
TLESYDILMGYGKYSGVNLDIGHFTAANYDAVEFIRKHHARITNLHVKDMKRDHGAYTPF
EEEEEEEEEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
GEGDTPMKGVLQLLKKEKYDFPANIELEYAIPPGSDLIAEMKKCLAYCKSCRA
CCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA