| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is ykvO [H]
Identifier: 116625136
GI number: 116625136
Start: 7600640
End: 7601389
Strand: Direct
Name: ykvO [H]
Synonym: Acid_6073
Alternate gene names: 116625136
Gene position: 7600640-7601389 (Clockwise)
Preceding gene: 116625135
Following gene: 116625137
Centisome position: 76.27
GC content: 55.73
Gene sequence:
>750_bases ATGGATAGATTCAAAGGAAAAACAGCACTGATCACTGGCGGAACCACCGGCTTAGGCTTGGCGACTGCCAAGTTGTTCAT CGAAGAAGGTGCACGAGTGATTGTGACTGGTCGCAACCCTGCAACGATCAAGGCGGCTCAGGCTGAACTTGGCGATAACG CTATCGTAGTGCCCAGCGACGCGACCTCTCTTCCTGATATGGATGCCTTAGCGACGAAGGTCAAGGAGACGTTCGGCAAG ATCGATGTGCTGTTCGTCAACGCGGGTTATGGGCATTTTGTGCCATTTGAGGCGGTGACTGAGGCAGTTTACGACGAGAT GCTCAATCTGAACGCTAAAGGGCCGTACTTCATCGTCCAAAAACTGGCGCCGCTCATGCCGGAAGGCAGTTCGGTAGTCT TCACCACTTCGATTGCCAACGTGAAGGCGGTGCCGACCTTGAGCGCCTATGGCGCCGCCAAAGCAGCGCTTCGTGCAATG ACTCGGAGCATTGCTGCCGAGTTGTTGCCCCGTGGAATACGTGTGAATGCGGTGACCCCGGGTCCAATTGGAGCGACGGA CGTAATGCATAGGCTTGGAATGCCGAAGGAGGCGCAAGATCAGGTCTACCTTCAGATGGCGGAAAGCGTTCCGATGAAGC GTCTCGGCCGACCGGAGGAAATTGCCAAGGCGGTGGCATTCCTGGCGATTGATGCAACCTTCACGACGGGAGCAGAGCTT CCAGTCGACGGAGGATGGTCTCAACTCTAA
Upstream 100 bases:
>100_bases AATATTAGTTACTCTCCAGTACGAAACACCTGAATCCAAGCCGTCATTATCGTACTCTCAAGTATGGAAGGCTTTGAGAC AGATAAACACAGGAGACAAC
Downstream 100 bases:
>100_bases GTTGTGGGCCGTCAGGGAAGATAAGCGGCGGGCGGCGAACTGTCTTAGGTGAAAACAACACACCGCATGAGGAGAGAGTC ATGAAGCAAAACCAACATGA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 249; Mature: 249
Protein sequence:
>249_residues MDRFKGKTALITGGTTGLGLATAKLFIEEGARVIVTGRNPATIKAAQAELGDNAIVVPSDATSLPDMDALATKVKETFGK IDVLFVNAGYGHFVPFEAVTEAVYDEMLNLNAKGPYFIVQKLAPLMPEGSSVVFTTSIANVKAVPTLSAYGAAKAALRAM TRSIAAELLPRGIRVNAVTPGPIGATDVMHRLGMPKEAQDQVYLQMAESVPMKRLGRPEEIAKAVAFLAIDATFTTGAEL PVDGGWSQL
Sequences:
>Translated_249_residues MDRFKGKTALITGGTTGLGLATAKLFIEEGARVIVTGRNPATIKAAQAELGDNAIVVPSDATSLPDMDALATKVKETFGK IDVLFVNAGYGHFVPFEAVTEAVYDEMLNLNAKGPYFIVQKLAPLMPEGSSVVFTTSIANVKAVPTLSAYGAAKAALRAM TRSIAAELLPRGIRVNAVTPGPIGATDVMHRLGMPKEAQDQVYLQMAESVPMKRLGRPEEIAKAVAFLAIDATFTTGAEL PVDGGWSQL >Mature_249_residues MDRFKGKTALITGGTTGLGLATAKLFIEEGARVIVTGRNPATIKAAQAELGDNAIVVPSDATSLPDMDALATKVKETFGK IDVLFVNAGYGHFVPFEAVTEAVYDEMLNLNAKGPYFIVQKLAPLMPEGSSVVFTTSIANVKAVPTLSAYGAAKAALRAM TRSIAAELLPRGIRVNAVTPGPIGATDVMHRLGMPKEAQDQVYLQMAESVPMKRLGRPEEIAKAVAFLAIDATFTTGAEL PVDGGWSQL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=35.0597609561753, Blast_Score=131, Evalue=5e-31, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=30.0813008130081, Blast_Score=116, Evalue=2e-26, Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=30.7086614173228, Blast_Score=114, Evalue=9e-26, Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=31.8897637795276, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=31.1023622047244, Blast_Score=111, Evalue=7e-25, Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=31.1023622047244, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI33667109, Length=182, Percent_Identity=32.4175824175824, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=31.6017316017316, Blast_Score=98, Evalue=9e-21, Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=29.0983606557377, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=30.241935483871, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=32.7868852459016, Blast_Score=91, Evalue=7e-19, Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=29.8039215686275, Blast_Score=88, Evalue=6e-18, Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI223718074, Length=237, Percent_Identity=28.2700421940928, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI83715985, Length=257, Percent_Identity=27.2373540856031, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=29.3193717277487, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI4503301, Length=253, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI302344755, Length=103, Percent_Identity=38.8349514563107, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI31542939, Length=191, Percent_Identity=26.7015706806283, Blast_Score=64, Evalue=8e-11, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=32.6771653543307, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI2367365, Length=250, Percent_Identity=36.8, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1789378, Length=244, Percent_Identity=30.7377049180328, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=31.0204081632653, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1787905, Length=252, Percent_Identity=33.7301587301587, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=28.968253968254, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=27.4193548387097, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=30.8, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=29.7619047619048, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=29.4820717131474, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=27.0718232044199, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786701, Length=182, Percent_Identity=28.021978021978, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI87082160, Length=257, Percent_Identity=28.0155642023346, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1787545, Length=261, Percent_Identity=25.6704980842912, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=27.0588235294118, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787526, Length=205, Percent_Identity=24.390243902439, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787891, Length=242, Percent_Identity=28.5123966942149, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=36.0902255639098, Blast_Score=135, Evalue=1e-32, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=35.4716981132075, Blast_Score=135, Evalue=3e-32, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=35.8778625954198, Blast_Score=132, Evalue=1e-31, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=33.3333333333333, Blast_Score=127, Evalue=4e-30, Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=34.6007604562738, Blast_Score=124, Evalue=3e-29, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=32.183908045977, Blast_Score=124, Evalue=5e-29, Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=34.3283582089552, Blast_Score=124, Evalue=6e-29, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=32.3308270676692, Blast_Score=123, Evalue=7e-29, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=32.3076923076923, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=34.0909090909091, Blast_Score=120, Evalue=7e-28, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=31.203007518797, Blast_Score=118, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17561402, Length=256, Percent_Identity=30.078125, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=34.5864661654135, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=31.4393939393939, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI193204405, Length=268, Percent_Identity=30.5970149253731, Blast_Score=114, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=32.1428571428571, Blast_Score=110, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=31.5789473684211, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=31.3253012048193, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=32.258064516129, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=31.0861423220974, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=31.4393939393939, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=30.8, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17536651, Length=265, Percent_Identity=30.188679245283, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI212645366, Length=252, Percent_Identity=29.3650793650794, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=31.0756972111554, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=31.5789473684211, Blast_Score=88, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=28.8973384030418, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=29.0836653386454, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17561272, Length=189, Percent_Identity=30.6878306878307, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17567345, Length=175, Percent_Identity=28, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17568967, Length=257, Percent_Identity=24.5136186770428, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17508651, Length=252, Percent_Identity=25.7936507936508, Blast_Score=66, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=257, Percent_Identity=27.2373540856031, Blast_Score=95, Evalue=9e-21, Organism=Saccharomyces cerevisiae, GI6322227, Length=204, Percent_Identity=30.3921568627451, Blast_Score=80, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6320089, Length=193, Percent_Identity=32.1243523316062, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322067, Length=195, Percent_Identity=27.1794871794872, Blast_Score=66, Evalue=5e-12, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=35.7142857142857, Blast_Score=139, Evalue=2e-33, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=33.7254901960784, Blast_Score=134, Evalue=6e-32, Organism=Drosophila melanogaster, GI28571526, Length=261, Percent_Identity=37.1647509578544, Blast_Score=132, Evalue=2e-31, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=34.2629482071713, Blast_Score=130, Evalue=9e-31, Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=33.0708661417323, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=30.8943089430894, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI24644337, Length=248, Percent_Identity=32.258064516129, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=31.5175097276265, Blast_Score=97, Evalue=7e-21, Organism=Drosophila melanogaster, GI17737361, Length=237, Percent_Identity=30.8016877637131, Blast_Score=90, Evalue=1e-18, Organism=Drosophila melanogaster, GI21358495, Length=191, Percent_Identity=28.7958115183246, Blast_Score=78, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26234; Mature: 26234
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRFKGKTALITGGTTGLGLATAKLFIEEGARVIVTGRNPATIKAAQAELGDNAIVVPSD CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHCCCCEEEECCC ATSLPDMDALATKVKETFGKIDVLFVNAGYGHFVPFEAVTEAVYDEMLNLNAKGPYFIVQ CCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH KLAPLMPEGSSVVFTTSIANVKAVPTLSAYGAAKAALRAMTRSIAAELLPRGIRVNAVTP HHHHCCCCCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC GPIGATDVMHRLGMPKEAQDQVYLQMAESVPMKRLGRPEEIAKAVAFLAIDATFTTGAEL CCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHEECEECCCCCC PVDGGWSQL CCCCCCCCC >Mature Secondary Structure MDRFKGKTALITGGTTGLGLATAKLFIEEGARVIVTGRNPATIKAAQAELGDNAIVVPSD CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHCCCCEEEECCC ATSLPDMDALATKVKETFGKIDVLFVNAGYGHFVPFEAVTEAVYDEMLNLNAKGPYFIVQ CCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHH KLAPLMPEGSSVVFTTSIANVKAVPTLSAYGAAKAALRAMTRSIAAELLPRGIRVNAVTP HHHHCCCCCCCEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC GPIGATDVMHRLGMPKEAQDQVYLQMAESVPMKRLGRPEEIAKAVAFLAIDATFTTGAEL CCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHEECEECCCCCC PVDGGWSQL CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]