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The map label for this gene is fimE [C]

Identifier: 116625064

GI number: 116625064

Start: 7518762

End: 7519982

Strand: Reverse

Name: fimE [C]

Synonym: Acid_5994

Alternate gene names: 116625064

Gene position: 7519982-7518762 (Counterclockwise)

Preceding gene: 116625065

Following gene: 116625063

Centisome position: 75.46

GC content: 58.48

Gene sequence:

>1221_bases
GTGCCAAGAAAGAACAGAAGCGACGGAGAGGGTAGCGTTTTTCAGCGCGGCGACGGTTGGGTTGCCCAGGTCAGCATCCG
CGACCGCGAGGGCAAGCGTCACCGCATCACGCGCTCCGCAGCCACGCAAAACGAGGCGCGCAAGCTCCTGACGAAGTTGA
AGGGGAAGCAAGACTCCCACACCCTCATCATCGGCGGCCGGGGTACACTTCGCGATTGGCTGAACGAGTGGCTAGAGCTT
TTTATCAAGCCGAACAGGGCGCCAAAGACTTACAAGTCCTATCACGACCTGCTGAAACAACATGTGCCGGAGAACGTCGG
CTCGATTCCCCTATCGCGAGTGGCGCAACAGCCCGAGACATTTCAGGCGCTCTTCGTCTCGATTGCTCAAGACGGCCTCG
GCAGAACCTCACAATTGTTGCGGGCCGTTCTCCGATCATCGCTGAACCGCGCCGTGAAATTGAAGCGTCTGGAGAGCAAT
CCGATTTTGGGTACAGACGCCGTCGGCTTCGTGTCGGGAGAGACGGCGGTATTCAGCGGCGAACAGGGCAAGCAGTTCCT
GAAGACCGCCGAAGGCGAGCGCCTCGGTGCTCTCTTCGTGACCGCGCTTTCTCTCGGATTGCGCAAGGGCGAATTGACCG
GTCTACGAGAAGAGGACCTCGACCTGGAGGGCCGCACGATCGAAGTGCGCCGCCAACTGCAATGGATCAAGTTGCCGGGT
GATGAGGAAGGTAGGTGGGTCGAACGGGCACCCAAGAAAGGCTCACAACGAACGCTCCCGATTACCGAAACGATTTACCG
CTTCGTGATCCGCCATCTCGCTCAGCGCAACGCCGAGGCTCTCGCCGCTGGCGAGTCATGGAAGGATTCCGGCTACCTCT
TCGTCAGTCCCAATGGAGCGCCGCTGCACGAGCGCAATATCAGCGAGGCATTCCATCTGGCCTGTGATCACGCGGGCGTT
CCTCGCATCCGCTTCCACGATACGAGGCATTCGTGCGGCACGCTTCTACACCTTCAAGGGGCCGACCCATTCATCATTCA
AAAGGTGCTGGGGCATTCGCAATTGAGTACGACGAGAAGGTACACGCACACGCCAATTGAGGTCACCCGACCGGCATTGG
CGCGGTTGGAGTCACTCTTCGATTCGACAGAAAAAGAAAGTGAAAAAACTCTGGTGGCTAACAGCGTGGCTAACAGGCCG
AAGGTGATAAAGTCGAACTAG

Upstream 100 bases:

>100_bases
CCCCGGGCCAAGGAATTGTTTGAAGGGATTTTGCATTCTGACGTAGAAACCGTCGTTCGCTACACGGACGGACGTATCCA
AATCATACGAGGTGGTTCCA

Downstream 100 bases:

>100_bases
GCCCAAGTGTTTATTTTGAATGAGTTATGGAGCCACCCGCCGGGATTGAACCGGCGACCTGCTGATTACGAATCAGCCGC
TCTACCAGCTGAGCTAGGGT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MPRKNRSDGEGSVFQRGDGWVAQVSIRDREGKRHRITRSAATQNEARKLLTKLKGKQDSHTLIIGGRGTLRDWLNEWLEL
FIKPNRAPKTYKSYHDLLKQHVPENVGSIPLSRVAQQPETFQALFVSIAQDGLGRTSQLLRAVLRSSLNRAVKLKRLESN
PILGTDAVGFVSGETAVFSGEQGKQFLKTAEGERLGALFVTALSLGLRKGELTGLREEDLDLEGRTIEVRRQLQWIKLPG
DEEGRWVERAPKKGSQRTLPITETIYRFVIRHLAQRNAEALAAGESWKDSGYLFVSPNGAPLHERNISEAFHLACDHAGV
PRIRFHDTRHSCGTLLHLQGADPFIIQKVLGHSQLSTTRRYTHTPIEVTRPALARLESLFDSTEKESEKTLVANSVANRP
KVIKSN

Sequences:

>Translated_406_residues
MPRKNRSDGEGSVFQRGDGWVAQVSIRDREGKRHRITRSAATQNEARKLLTKLKGKQDSHTLIIGGRGTLRDWLNEWLEL
FIKPNRAPKTYKSYHDLLKQHVPENVGSIPLSRVAQQPETFQALFVSIAQDGLGRTSQLLRAVLRSSLNRAVKLKRLESN
PILGTDAVGFVSGETAVFSGEQGKQFLKTAEGERLGALFVTALSLGLRKGELTGLREEDLDLEGRTIEVRRQLQWIKLPG
DEEGRWVERAPKKGSQRTLPITETIYRFVIRHLAQRNAEALAAGESWKDSGYLFVSPNGAPLHERNISEAFHLACDHAGV
PRIRFHDTRHSCGTLLHLQGADPFIIQKVLGHSQLSTTRRYTHTPIEVTRPALARLESLFDSTEKESEKTLVANSVANRP
KVIKSN
>Mature_405_residues
PRKNRSDGEGSVFQRGDGWVAQVSIRDREGKRHRITRSAATQNEARKLLTKLKGKQDSHTLIIGGRGTLRDWLNEWLELF
IKPNRAPKTYKSYHDLLKQHVPENVGSIPLSRVAQQPETFQALFVSIAQDGLGRTSQLLRAVLRSSLNRAVKLKRLESNP
ILGTDAVGFVSGETAVFSGEQGKQFLKTAEGERLGALFVTALSLGLRKGELTGLREEDLDLEGRTIEVRRQLQWIKLPGD
EEGRWVERAPKKGSQRTLPITETIYRFVIRHLAQRNAEALAAGESWKDSGYLFVSPNGAPLHERNISEAFHLACDHAGVP
RIRFHDTRHSCGTLLHLQGADPFIIQKVLGHSQLSTTRRYTHTPIEVTRPALARLESLFDSTEKESEKTLVANSVANRPK
VIKSN

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45501; Mature: 45370

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRKNRSDGEGSVFQRGDGWVAQVSIRDREGKRHRITRSAATQNEARKLLTKLKGKQDSH
CCCCCCCCCCCCEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TLIIGGRGTLRDWLNEWLELFIKPNRAPKTYKSYHDLLKQHVPENVGSIPLSRVAQQPET
EEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHH
FQALFVSIAQDGLGRTSQLLRAVLRSSLNRAVKLKRLESNPILGTDAVGFVSGETAVFSG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEEEC
EQGKQFLKTAEGERLGALFVTALSLGLRKGELTGLREEDLDLEGRTIEVRRQLQWIKLPG
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEECCEEEEECCC
DEEGRWVERAPKKGSQRTLPITETIYRFVIRHLAQRNAEALAAGESWKDSGYLFVSPNGA
CCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEECCCCC
PLHERNISEAFHLACDHAGVPRIRFHDTRHSCGTLLHLQGADPFIIQKVLGHSQLSTTRR
CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCCHHHHHHHHCCHHHHHHHH
YTHTPIEVTRPALARLESLFDSTEKESEKTLVANSVANRPKVIKSN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
>Mature Secondary Structure 
PRKNRSDGEGSVFQRGDGWVAQVSIRDREGKRHRITRSAATQNEARKLLTKLKGKQDSH
CCCCCCCCCCCEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TLIIGGRGTLRDWLNEWLELFIKPNRAPKTYKSYHDLLKQHVPENVGSIPLSRVAQQPET
EEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHH
FQALFVSIAQDGLGRTSQLLRAVLRSSLNRAVKLKRLESNPILGTDAVGFVSGETAVFSG
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCEEEEEC
EQGKQFLKTAEGERLGALFVTALSLGLRKGELTGLREEDLDLEGRTIEVRRQLQWIKLPG
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEECCEEEEECCC
DEEGRWVERAPKKGSQRTLPITETIYRFVIRHLAQRNAEALAAGESWKDSGYLFVSPNGA
CCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEECCCCC
PLHERNISEAFHLACDHAGVPRIRFHDTRHSCGTLLHLQGADPFIIQKVLGHSQLSTTRR
CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEECCCCHHHHHHHHCCHHHHHHHH
YTHTPIEVTRPALARLESLFDSTEKESEKTLVANSVANRPKVIKSN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]