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The map label for this gene is ybhR [H]

Identifier: 116625062

GI number: 116625062

Start: 7516742

End: 7517893

Strand: Direct

Name: ybhR [H]

Synonym: Acid_5992

Alternate gene names: 116625062

Gene position: 7516742-7517893 (Clockwise)

Preceding gene: 116625061

Following gene: 116625067

Centisome position: 75.43

GC content: 63.8

Gene sequence:

>1152_bases
ATGTGGGAGCGAATCTCGGTCATCCTCCGCAAAGAGTTTCTGCAGGCGCTGCGTGAACCGCGCATGCGGGTGCTGCTGTT
CGTGCCGCCGGTGGTGCAGCTGATTGTCTTCGGGTTCGCGGTCAACCTGGACGTGGATCACGCGCGAATTGCGTGGGTAG
ACCAGGACCGCACGCCGGAGAGCCGCGACCTGCGCGACCGCTTCACGGGGTCGGGCAGGTTCGACATCGTGGCCGAACCG
GCGGGCGAAGAAGGCGTGCAGCGCGCGCTCGATAGCGGTGAAGCGCAGGCGGTGGTGCGGGTTCTGCATGGATTCGCGCG
CGATGTGGCGCGGGGGCAGAGCACGGAGGTGCAGGTGCTGATCGACGGCACCAACTCCAACACCGCGAGCCTGGTTTCAA
GCTACGCGGGCGAAATCATCGCGAGTTATTCGGCGGACGTGATGGCCGGGCAGCAGCGGGTGCGGGTGCTGACGCGCAGT
CCGGGCGCGGCGGTGAGCGCTTCGGTGCCGCAGGTGGCGGCGCGCAGCCGCGTCTGGTTCAATCCCGACTTGTACAGCCG
CAACTACTTCGTGCCGGGCGTGATCGCCAACATCATCATGCTGGTGACGTTGATGCTCACGGCGCTGGCGATTGTGCGCG
AGAAGGAAATCGGCACTATGGAGCAGTTGATGGTGACGCCGGTGCGTCCGGTGGAACTGATGCTCGGCAAGACGCTGCCC
TTCGCGCTGGTGGGGCTGCTCGATGTGGCGCTGATCACGGCGGTGGCGCTGCTGCTGTTCCATATTCCGCTGCACGGCAG
CTTTCTGCTGCTGATGGCGTGCGCCGTGCTGTTCCTGCTGACTTCTTTGGGGGCGGGGCTGTTTCTCTCAACGATCTCGC
AGACGCAGCAGCAGGCGATGATGGCGTCATTCTTCTTTTCGACCCCGGCGTTCATGCTCAGCGGCTTCGCGTTTCCGATC
CGCAACATGCCGATGGCGGTGCAGTACCTCACGTATTTAAATCCGGTGCGGTACTTCATCGAGATCGTGCGCGGCATTTT
CTTGAAGGGGTCGGGAGTGTCGGTGTTGTGGCCTCAGATGCTGAGCCTGGCGGTGTACGGCGTGGCGATTCTCGGGCTGA
GCGCGTTCCGGTTCCAGAAGAAGCTGGACTGA

Upstream 100 bases:

>100_bases
TTGAGCGTGCTGTGGCAGGAACTGATGTTTCTGACGCTATACGCACTGATCATGTTCCTGATGGCGACACGCAAGCTCAA
CCAGAAGCTGACATAACGAT

Downstream 100 bases:

>100_bases
TTAGGGAAGAAGTTTGCCGAGGGCGTCGGGCGGGGCAGAGAGCGTGGCGTGCACGGTGCTTTCGTCGCGGCGTAGTTGGA
CTGAACGCAGCAGGGCCGCG

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MWERISVILRKEFLQALREPRMRVLLFVPPVVQLIVFGFAVNLDVDHARIAWVDQDRTPESRDLRDRFTGSGRFDIVAEP
AGEEGVQRALDSGEAQAVVRVLHGFARDVARGQSTEVQVLIDGTNSNTASLVSSYAGEIIASYSADVMAGQQRVRVLTRS
PGAAVSASVPQVAARSRVWFNPDLYSRNYFVPGVIANIIMLVTLMLTALAIVREKEIGTMEQLMVTPVRPVELMLGKTLP
FALVGLLDVALITAVALLLFHIPLHGSFLLLMACAVLFLLTSLGAGLFLSTISQTQQQAMMASFFFSTPAFMLSGFAFPI
RNMPMAVQYLTYLNPVRYFIEIVRGIFLKGSGVSVLWPQMLSLAVYGVAILGLSAFRFQKKLD

Sequences:

>Translated_383_residues
MWERISVILRKEFLQALREPRMRVLLFVPPVVQLIVFGFAVNLDVDHARIAWVDQDRTPESRDLRDRFTGSGRFDIVAEP
AGEEGVQRALDSGEAQAVVRVLHGFARDVARGQSTEVQVLIDGTNSNTASLVSSYAGEIIASYSADVMAGQQRVRVLTRS
PGAAVSASVPQVAARSRVWFNPDLYSRNYFVPGVIANIIMLVTLMLTALAIVREKEIGTMEQLMVTPVRPVELMLGKTLP
FALVGLLDVALITAVALLLFHIPLHGSFLLLMACAVLFLLTSLGAGLFLSTISQTQQQAMMASFFFSTPAFMLSGFAFPI
RNMPMAVQYLTYLNPVRYFIEIVRGIFLKGSGVSVLWPQMLSLAVYGVAILGLSAFRFQKKLD
>Mature_383_residues
MWERISVILRKEFLQALREPRMRVLLFVPPVVQLIVFGFAVNLDVDHARIAWVDQDRTPESRDLRDRFTGSGRFDIVAEP
AGEEGVQRALDSGEAQAVVRVLHGFARDVARGQSTEVQVLIDGTNSNTASLVSSYAGEIIASYSADVMAGQQRVRVLTRS
PGAAVSASVPQVAARSRVWFNPDLYSRNYFVPGVIANIIMLVTLMLTALAIVREKEIGTMEQLMVTPVRPVELMLGKTLP
FALVGLLDVALITAVALLLFHIPLHGSFLLLMACAVLFLLTSLGAGLFLSTISQTQQQAMMASFFFSTPAFMLSGFAFPI
RNMPMAVQYLTYLNPVRYFIEIVRGIFLKGSGVSVLWPQMLSLAVYGVAILGLSAFRFQKKLD

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=383, Percent_Identity=32.1148825065274, Blast_Score=229, Evalue=2e-61,
Organism=Escherichia coli, GI1787011, Length=387, Percent_Identity=31.0077519379845, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI48994943, Length=374, Percent_Identity=29.6791443850267, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI226510979, Length=390, Percent_Identity=28.974358974359, Blast_Score=135, Evalue=3e-33,
Organism=Drosophila melanogaster, GI24650855, Length=377, Percent_Identity=20.9549071618037, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24650853, Length=374, Percent_Identity=20.5882352941176, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 42174; Mature: 42174

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWERISVILRKEFLQALREPRMRVLLFVPPVVQLIVFGFAVNLDVDHARIAWVDQDRTPE
CCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCC
SRDLRDRFTGSGRFDIVAEPAGEEGVQRALDSGEAQAVVRVLHGFARDVARGQSTEVQVL
CHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
IDGTNSNTASLVSSYAGEIIASYSADVMAGQQRVRVLTRSPGAAVSASVPQVAARSRVWF
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCEE
NPDLYSRNYFVPGVIANIIMLVTLMLTALAIVREKEIGTMEQLMVTPVRPVELMLGKTLP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHCCCHH
FALVGLLDVALITAVALLLFHIPLHGSFLLLMACAVLFLLTSLGAGLFLSTISQTQQQAM
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
MASFFFSTPAFMLSGFAFPIRNMPMAVQYLTYLNPVRYFIEIVRGIFLKGSGVSVLWPQM
HHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LSLAVYGVAILGLSAFRFQKKLD
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MWERISVILRKEFLQALREPRMRVLLFVPPVVQLIVFGFAVNLDVDHARIAWVDQDRTPE
CCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCC
SRDLRDRFTGSGRFDIVAEPAGEEGVQRALDSGEAQAVVRVLHGFARDVARGQSTEVQVL
CHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
IDGTNSNTASLVSSYAGEIIASYSADVMAGQQRVRVLTRSPGAAVSASVPQVAARSRVWF
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCEE
NPDLYSRNYFVPGVIANIIMLVTLMLTALAIVREKEIGTMEQLMVTPVRPVELMLGKTLP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHCCCHH
FALVGLLDVALITAVALLLFHIPLHGSFLLLMACAVLFLLTSLGAGLFLSTISQTQQQAM
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
MASFFFSTPAFMLSGFAFPIRNMPMAVQYLTYLNPVRYFIEIVRGIFLKGSGVSVLWPQM
HHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LSLAVYGVAILGLSAFRFQKKLD
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]