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The map label for this gene is rbn [C]

Identifier: 116624854

GI number: 116624854

Start: 7235459

End: 7236562

Strand: Direct

Name: rbn [C]

Synonym: Acid_5778

Alternate gene names: 116624854

Gene position: 7235459-7236562 (Clockwise)

Preceding gene: 116624849

Following gene: 116624858

Centisome position: 72.6

GC content: 60.78

Gene sequence:

>1104_bases
ATGTTATGCACCCGGCACGCCAACGTCTGTGGGACAACCTTATCGCACAGATGCACGGAACCAACAGGGCGGCTACGCGC
GTCCTCAGAAGTGATGCAGGAAGGCGATAAGCCCGTGATTCTGGAGGCAGGCGGCACCGAAGTCGCGACTGCGGCCGGCG
GCGCGAGGCGCTATCGCAAGCCCCTGACTGCTTTTCGGTGGTGCGATGTCAAATTGCTGCTGTGGGAAAGCTTTGATCAC
TGGACCATTCACAAGGGGCCGCGGCTCGGAGCGTCGCTTGCCTTTTATACCCTGCTTTCGCTTACACCATTAGTGCTGGT
GATCGTGAGCATCGCCGGACTCGTGTTCGGCCGGCCGGCAGCCGAGTCGCAGATCTTGTGGGAGGTGGAAGACACGGTGG
GGCCCGCGGGCCGGCACGCCATCCAGTCTCTGCTGGAAGGCGCGCAACACACCACGCACGGTATTCTGGCCACCGCGCTG
GGGCTGCTGACGCTGCTGTTCGGAGCCTCCGGGGTGCTGCTTGAGCTGCGCGATGCGCTTAACACCATCTGGGAAGTACC
GGCGCACGCACAGAACGGACTGAAGAGCCTGCTGCAACTTGCCAAGGAGCGTCTGTTCTCCTTCGCACTGGTCATCGCCA
CCGGCTTTCTGCTGGTGGTTTCACTCATCGTAAACGCGTGGGTGGCTGCGCTGGGAAGGTTCGCGGCCCATGTGCTGCCC
GCGCCGGAGGGAGTATTGGAGGTGGCGAATGCGCTTGTTTCCTTCCTGGTGATCACAGCCTTGTTCGCGGCGATCTACAG
AATCATGCCGGACACACGGATTGAGTGGCGGGATGTAGCGCTGGGCGCGACCGTAACATCGCTACTTTTCACCGGCGGCA
AACTCCTCATTGGGCTTTATCTGGGCAAGGCAACCTTTGCCTCAACTTACGGAGCGGCAGGGTCAATAGTGGCGCTGTTG
GTATGGGTGTATTACTCGGGCCAGATCTTTTTCCTGGGGGCGGAGTTCACTAAAGCCTTCGCAGACCAGTATGGCTGCAA
GCCCGCTGCGATCCTCGCTCCTACGACTCTCGCTGCTACGACCCTCGAGTCGCAAGGTCGATAG

Upstream 100 bases:

>100_bases
TTCTCGGCATCGTAGAGGTCTCGAATTTCCTCTTCGAAAAGTCCCTTGAGGGAGGTTGTCATTGTGCTCTCCTTGATTGA
AAGTTTTGCAGGGTCGAATT

Downstream 100 bases:

>100_bases
CGCGGCGCAGCTCCGTGACTAAAGGCTGAAATTTACTTACTTCGTCGGGCTCCAGGCGCTTGAGGCGAGCAAGAATCTCG
TCGTAGACCCGCCCGGCATC

Product: tRNA-processing RNAse BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MLCTRHANVCGTTLSHRCTEPTGRLRASSEVMQEGDKPVILEAGGTEVATAAGGARRYRKPLTAFRWCDVKLLLWESFDH
WTIHKGPRLGASLAFYTLLSLTPLVLVIVSIAGLVFGRPAAESQILWEVEDTVGPAGRHAIQSLLEGAQHTTHGILATAL
GLLTLLFGASGVLLELRDALNTIWEVPAHAQNGLKSLLQLAKERLFSFALVIATGFLLVVSLIVNAWVAALGRFAAHVLP
APEGVLEVANALVSFLVITALFAAIYRIMPDTRIEWRDVALGATVTSLLFTGGKLLIGLYLGKATFASTYGAAGSIVALL
VWVYYSGQIFFLGAEFTKAFADQYGCKPAAILAPTTLAATTLESQGR

Sequences:

>Translated_367_residues
MLCTRHANVCGTTLSHRCTEPTGRLRASSEVMQEGDKPVILEAGGTEVATAAGGARRYRKPLTAFRWCDVKLLLWESFDH
WTIHKGPRLGASLAFYTLLSLTPLVLVIVSIAGLVFGRPAAESQILWEVEDTVGPAGRHAIQSLLEGAQHTTHGILATAL
GLLTLLFGASGVLLELRDALNTIWEVPAHAQNGLKSLLQLAKERLFSFALVIATGFLLVVSLIVNAWVAALGRFAAHVLP
APEGVLEVANALVSFLVITALFAAIYRIMPDTRIEWRDVALGATVTSLLFTGGKLLIGLYLGKATFASTYGAAGSIVALL
VWVYYSGQIFFLGAEFTKAFADQYGCKPAAILAPTTLAATTLESQGR
>Mature_367_residues
MLCTRHANVCGTTLSHRCTEPTGRLRASSEVMQEGDKPVILEAGGTEVATAAGGARRYRKPLTAFRWCDVKLLLWESFDH
WTIHKGPRLGASLAFYTLLSLTPLVLVIVSIAGLVFGRPAAESQILWEVEDTVGPAGRHAIQSLLEGAQHTTHGILATAL
GLLTLLFGASGVLLELRDALNTIWEVPAHAQNGLKSLLQLAKERLFSFALVIATGFLLVVSLIVNAWVAALGRFAAHVLP
APEGVLEVANALVSFLVITALFAAIYRIMPDTRIEWRDVALGATVTSLLFTGGKLLIGLYLGKATFASTYGAAGSIVALL
VWVYYSGQIFFLGAEFTKAFADQYGCKPAAILAPTTLAATTLESQGR

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=306, Percent_Identity=29.4117647058824, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 39241; Mature: 39241

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCTRHANVCGTTLSHRCTEPTGRLRASSEVMQEGDKPVILEAGGTEVATAAGGARRYRK
CCCCCCCCHHCCHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEHHHCCHHHHHHH
PLTAFRWCDVKLLLWESFDHWTIHKGPRLGASLAFYTLLSLTPLVLVIVSIAGLVFGRPA
HHHHHHHCCEEEEEECCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AESQILWEVEDTVGPAGRHAIQSLLEGAQHTTHGILATALGLLTLLFGASGVLLELRDAL
CCCCEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
NTIWEVPAHAQNGLKSLLQLAKERLFSFALVIATGFLLVVSLIVNAWVAALGRFAAHVLP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
APEGVLEVANALVSFLVITALFAAIYRIMPDTRIEWRDVALGATVTSLLFTGGKLLIGLY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
LGKATFASTYGAAGSIVALLVWVYYSGQIFFLGAEFTKAFADQYGCKPAAILAPTTLAAT
HHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHCCCCCHHCCCHHHHHH
TLESQGR
HHHCCCC
>Mature Secondary Structure
MLCTRHANVCGTTLSHRCTEPTGRLRASSEVMQEGDKPVILEAGGTEVATAAGGARRYRK
CCCCCCCCHHCCHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEHHHCCHHHHHHH
PLTAFRWCDVKLLLWESFDHWTIHKGPRLGASLAFYTLLSLTPLVLVIVSIAGLVFGRPA
HHHHHHHCCEEEEEECCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AESQILWEVEDTVGPAGRHAIQSLLEGAQHTTHGILATALGLLTLLFGASGVLLELRDAL
CCCCEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
NTIWEVPAHAQNGLKSLLQLAKERLFSFALVIATGFLLVVSLIVNAWVAALGRFAAHVLP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
APEGVLEVANALVSFLVITALFAAIYRIMPDTRIEWRDVALGATVTSLLFTGGKLLIGLY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHH
LGKATFASTYGAAGSIVALLVWVYYSGQIFFLGAEFTKAFADQYGCKPAAILAPTTLAAT
HHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHCCCCCHHCCCHHHHHH
TLESQGR
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA