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The map label for this gene is ypdA [H]

Identifier: 116624657

GI number: 116624657

Start: 6992742

End: 6993788

Strand: Direct

Name: ypdA [H]

Synonym: Acid_5581

Alternate gene names: 116624657

Gene position: 6992742-6993788 (Clockwise)

Preceding gene: 116624656

Following gene: 116624659

Centisome position: 70.17

GC content: 67.62

Gene sequence:

>1047_bases
ATGCATCCCATCCTCGCGGCGCGGGTCCGCGTCCTGCTCTACCTCGTGGGCTGGATCCCGATTCTCGCGCTGCTCGATTA
CGTGCTCTGGACTTCCGGCGGAGTCTCCTGGATGGATGGCGCCGCGGTGCTCGCCCCCGCCTGCGCCGTGTTTGCGTTTG
CCTGTCTTTCTCCCTGGCCCCTCTGCCGCGTCCGTCCCCTGCGCCTGTCCGCCGCTGCTTCCCTCGCGTTCACCTGGGCC
GGAGCCGCCGCCGCGGCGTCCGCGACGTTCGCCGGCGCTGCCTGGATCTCCGGCCGCCTTCAGGGCCGCCCTGTGCTCCA
CCTCGACCTGCTGTTCGGCATGGGGATCATTCTCTACCTGCTCTCCGCCGGGTTGCATTACACCGCCCTGGCCGCCGACG
CCTCGCGCGCCGCCACGCTGAGCGCCGTCGAGGCCCACGCCCTCGCCCGCGACGCCGAACTCTACGCGCTGCGCATGCAG
ATCAACCCGCACTTCCTCTTCAACAGCCTTCACTCGATCGCTGCGCTCACCACGCAGGACGCCGTGCGTGCCCGCGAAAT
GTGTCTGCGCCTCTCCGAATTTCTGCGTAGCAGCCTCGGCCTCGGCGATCGCGAAGACATTCCGCTTCGCGAAGAACTCG
CCCTCGCGCGCAGCTATCTCGACGTAGAACACGTGCGCTTCGGAGACCGCCTCGTGGTCCGCGAAGAAATTCAGGACGCC
TGCCAGGAGTGCTCCATCCCCGCGCTGATCCTTCAGCCGCTGATGGAAAACGCCGTCAAGCACGGAGTCGCCGGCCTCGT
CGAAGGGAGTATCATCCGCCTGGCCGTGATCCGCGTTGGGGCGGAGGTTCACATCGCCGTGGAAAATGCCTTCGATCCCG
ACGCATCCGTAGACCGCCTCGGCGTCGGCCTAGCCCACGTCCGCCGCCGCCTCCAGGTCCGCTATGGCGCCGAGGCTACC
TTCCACGCCGCCGCCTCAGACCGCCTCTACCGCGTCAATCTCCGCTTCCCTTGCGTCACGCTTACACCGGGCCGCAACCT
AACATAG

Upstream 100 bases:

>100_bases
TAAGTCCGCCCAGCCCGCCCCCGACATGCCCGGCGTCAAACGGCTCTTCATCCGCGGCTCGGCCGTCTTCGGCGGCGTCG
ATATCAAGAACTGAACTTCC

Downstream 100 bases:

>100_bases
TCTTTGTTGTTATCTGCGTTCATCTGCGGCCCATTTTGTTTTTCTTATCCCACGCGCCCACTTCCCGATTCCATCACTTC
CATCAGCCGCGCGTATCCCG

Product: signal transduction histidine kinase LytS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MHPILAARVRVLLYLVGWIPILALLDYVLWTSGGVSWMDGAAVLAPACAVFAFACLSPWPLCRVRPLRLSAAASLAFTWA
GAAAAASATFAGAAWISGRLQGRPVLHLDLLFGMGIILYLLSAGLHYTALAADASRAATLSAVEAHALARDAELYALRMQ
INPHFLFNSLHSIAALTTQDAVRAREMCLRLSEFLRSSLGLGDREDIPLREELALARSYLDVEHVRFGDRLVVREEIQDA
CQECSIPALILQPLMENAVKHGVAGLVEGSIIRLAVIRVGAEVHIAVENAFDPDASVDRLGVGLAHVRRRLQVRYGAEAT
FHAAASDRLYRVNLRFPCVTLTPGRNLT

Sequences:

>Translated_348_residues
MHPILAARVRVLLYLVGWIPILALLDYVLWTSGGVSWMDGAAVLAPACAVFAFACLSPWPLCRVRPLRLSAAASLAFTWA
GAAAAASATFAGAAWISGRLQGRPVLHLDLLFGMGIILYLLSAGLHYTALAADASRAATLSAVEAHALARDAELYALRMQ
INPHFLFNSLHSIAALTTQDAVRAREMCLRLSEFLRSSLGLGDREDIPLREELALARSYLDVEHVRFGDRLVVREEIQDA
CQECSIPALILQPLMENAVKHGVAGLVEGSIIRLAVIRVGAEVHIAVENAFDPDASVDRLGVGLAHVRRRLQVRYGAEAT
FHAAASDRLYRVNLRFPCVTLTPGRNLT
>Mature_348_residues
MHPILAARVRVLLYLVGWIPILALLDYVLWTSGGVSWMDGAAVLAPACAVFAFACLSPWPLCRVRPLRLSAAASLAFTWA
GAAAAASATFAGAAWISGRLQGRPVLHLDLLFGMGIILYLLSAGLHYTALAADASRAATLSAVEAHALARDAELYALRMQ
INPHFLFNSLHSIAALTTQDAVRAREMCLRLSEFLRSSLGLGDREDIPLREELALARSYLDVEHVRFGDRLVVREEIQDA
CQECSIPALILQPLMENAVKHGVAGLVEGSIIRLAVIRVGAEVHIAVENAFDPDASVDRLGVGLAHVRRRLQVRYGAEAT
FHAAASDRLYRVNLRFPCVTLTPGRNLT

Specific function: Unknown

COG id: COG3275

COG function: function code T; Putative regulator of cell autolysis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=195, Percent_Identity=34.8717948717949, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1788446, Length=195, Percent_Identity=32.3076923076923, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: NA

Molecular weight: Translated: 37743; Mature: 37743

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPILAARVRVLLYLVGWIPILALLDYVLWTSGGVSWMDGAAVLAPACAVFAFACLSPWP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHCCCCC
LCRVRPLRLSAAASLAFTWAGAAAAASATFAGAAWISGRLQGRPVLHLDLLFGMGIILYL
CCCEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHH
LSAGLHYTALAADASRAATLSAVEAHALARDAELYALRMQINPHFLFNSLHSIAALTTQD
HHCCCHHEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
AVRAREMCLRLSEFLRSSLGLGDREDIPLREELALARSYLDVEHVRFGDRLVVREEIQDA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHH
CQECSIPALILQPLMENAVKHGVAGLVEGSIIRLAVIRVGAEVHIAVENAFDPDASVDRL
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHH
GVGLAHVRRRLQVRYGAEATFHAAASDRLYRVNLRFPCVTLTPGRNLT
HHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCEEEECCCCCCC
>Mature Secondary Structure
MHPILAARVRVLLYLVGWIPILALLDYVLWTSGGVSWMDGAAVLAPACAVFAFACLSPWP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHCCCCC
LCRVRPLRLSAAASLAFTWAGAAAAASATFAGAAWISGRLQGRPVLHLDLLFGMGIILYL
CCCEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHH
LSAGLHYTALAADASRAATLSAVEAHALARDAELYALRMQINPHFLFNSLHSIAALTTQD
HHCCCHHEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
AVRAREMCLRLSEFLRSSLGLGDREDIPLREELALARSYLDVEHVRFGDRLVVREEIQDA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHEEHHHHHHH
CQECSIPALILQPLMENAVKHGVAGLVEGSIIRLAVIRVGAEVHIAVENAFDPDASVDRL
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHH
GVGLAHVRRRLQVRYGAEATFHAAASDRLYRVNLRFPCVTLTPGRNLT
HHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]