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The map label for this gene is tolB [H]

Identifier: 116624613

GI number: 116624613

Start: 6940929

End: 6942545

Strand: Direct

Name: tolB [H]

Synonym: Acid_5537

Alternate gene names: 116624613

Gene position: 6940929-6942545 (Clockwise)

Preceding gene: 116624612

Following gene: 116624615

Centisome position: 69.65

GC content: 68.34

Gene sequence:

>1617_bases
ATGTCCTACCCGAACCCCTGGAAATTGGCAGCCGTCTGCCTGGCGGCAGCCAGCGCCTACCTGTGGATCGCAAACCGGCG
TACCGCGGCTGAAGACCTCGCGTTCGTCCCCCTCACCTCCGGCGCCGCCCTGACCGCGTCCCCCGCCATCTCCGCCGACG
GCCAGCTCGCAGCCTACGCCTCGGACCGCGACGCCAGGAATCTCGAGCTCTACGTGCAACCCATCCCTTCAGGCATGCCG
GTCCGTCTCACCCGCACTCCCGAGGATGAATCCGAACCCGCGTTTTCCCCCGATTCGGGCTCGCTCGCATTCCGCTCGGA
GAAAGGCGGCGGCGGCATCTACGTGATGCCCGCCCGGGGGGGCGACGCGAAGCTGCTCGCACAGGGCGGCCGCGATCCGC
GCTATTCGCCGGATGGCAAATGGATCGCTTACTGGGATCAGGACGCCGCCTGGGTGATTCCGAGCAATGGCGGCACTGCG
CGCAAGATCTTCGCGACTCCGGGCGCGCGCCATCCAATCTGGTCCCCCGACGGCGCGCTCGTCCTGGCGCAAGCCAACAA
CGAGTTCGTGGTGGGAGCGGTCGGCGTCGCACCCGCGCCCGCCGGCATTCCGGGCCGACTGCAGGCCGACTCTCCGCAAT
GGACCGCCGGCGGCCTGTTTTTCGTTGAACGCACCGGCTGGGTCCGCAACATCTGGCGCATCCCGCTCGATGCACGCGGC
CGCGCGACCGCCGCCGCGATGCGCGTCACCAGCGGCCCCGAATCCATCGGCGATGTCGCCGTCTCACGCGATGGCCGCAT
CCTCTTCACCGCCGGCAGCCAGAATTTCCAGGTCTGGGGCCTCCCGCTCGATGCCAACACCGGCAAGCCGGCCGGAGTTC
CACAGCGGCTCACCGATGGGGCAGCCACTCTCGAACATCCCGCGATCTCCGCCGACGGCCGCCTCCTGCTCTACGACGCG
CAGCGCTACGGGCTCCAGCAGCTTTTCCTGCGCGACCTCGCATCCGGCGAGGAACGTGTCGCCGCCGCCAAACCGGCGGG
AGTCTCCGGCGGCCAATTCCTCCGCGGCGGACGCATCATCTACGGATCCGGAGGTGACGTCTACGTCACCGGCGAATCTC
GCAAGCTCGCCGCCGGTGGGCGGCCCTTGGCAGTGGACCGTAAGGAAGAGATCGCACTCGTCCGCTCGCCCAGCTCGCTG
GACGCCCTCAATCTGAAATCTCTCGAGCGCGTTCCCTTATTGCGTGCCGCGATCTCGCAGGCGGCCTTCTCACCCGACGA
CCGGTGGATTGCTTTCTCCACCGGCGGCCGTATCTATCGCGCTCCCAATCGCGGCCTCCAGGAGATTCCACGAAGCGAGT
GGCTGCCGGTCGCCGCCGGCGACAAACCCCGCTTCTCTCCCGATGGCAGCCTGCTCTACTTCGTCGCTGACGGCGGAATC
CATGCCGTGCGCCTCGCTACGCCGGGCGAGCCGTTCTCGGTCTGGGAGCCGCGCGAACCGCGCCTGTCGCTCGCCGCCGT
CAACCCTGCCGCGCTCGAACTCGGCATCGCCCGCGACAAACTGGTCGTCCTGCTCGCCGAATCCAACTTCAACCTCTGGA
TGGCCGACCGCCCTTAA

Upstream 100 bases:

>100_bases
GACCCGCGTCGATGCCGCCCTCGTCTCCATCTCCAAAGAGATCCGCCTCCTTAAACAACGCCTCCGCAAAACCCGCCCCG
GGGTATCATGACCATTCTCA

Downstream 100 bases:

>100_bases
TCCTACTCGCGCGTGCTGACCTTATCCGCCGTCGGGAAATCGCTCGGGACTTTCTGCGTGACTTTGCCGCTGGCCGCCCA
CTCCGCGCCGCGCTGCAGCG

Product: periplasmic component of the Tol biopolymer transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 538; Mature: 537

Protein sequence:

>538_residues
MSYPNPWKLAAVCLAAASAYLWIANRRTAAEDLAFVPLTSGAALTASPAISADGQLAAYASDRDARNLELYVQPIPSGMP
VRLTRTPEDESEPAFSPDSGSLAFRSEKGGGGIYVMPARGGDAKLLAQGGRDPRYSPDGKWIAYWDQDAAWVIPSNGGTA
RKIFATPGARHPIWSPDGALVLAQANNEFVVGAVGVAPAPAGIPGRLQADSPQWTAGGLFFVERTGWVRNIWRIPLDARG
RATAAAMRVTSGPESIGDVAVSRDGRILFTAGSQNFQVWGLPLDANTGKPAGVPQRLTDGAATLEHPAISADGRLLLYDA
QRYGLQQLFLRDLASGEERVAAAKPAGVSGGQFLRGGRIIYGSGGDVYVTGESRKLAAGGRPLAVDRKEEIALVRSPSSL
DALNLKSLERVPLLRAAISQAAFSPDDRWIAFSTGGRIYRAPNRGLQEIPRSEWLPVAAGDKPRFSPDGSLLYFVADGGI
HAVRLATPGEPFSVWEPREPRLSLAAVNPAALELGIARDKLVVLLAESNFNLWMADRP

Sequences:

>Translated_538_residues
MSYPNPWKLAAVCLAAASAYLWIANRRTAAEDLAFVPLTSGAALTASPAISADGQLAAYASDRDARNLELYVQPIPSGMP
VRLTRTPEDESEPAFSPDSGSLAFRSEKGGGGIYVMPARGGDAKLLAQGGRDPRYSPDGKWIAYWDQDAAWVIPSNGGTA
RKIFATPGARHPIWSPDGALVLAQANNEFVVGAVGVAPAPAGIPGRLQADSPQWTAGGLFFVERTGWVRNIWRIPLDARG
RATAAAMRVTSGPESIGDVAVSRDGRILFTAGSQNFQVWGLPLDANTGKPAGVPQRLTDGAATLEHPAISADGRLLLYDA
QRYGLQQLFLRDLASGEERVAAAKPAGVSGGQFLRGGRIIYGSGGDVYVTGESRKLAAGGRPLAVDRKEEIALVRSPSSL
DALNLKSLERVPLLRAAISQAAFSPDDRWIAFSTGGRIYRAPNRGLQEIPRSEWLPVAAGDKPRFSPDGSLLYFVADGGI
HAVRLATPGEPFSVWEPREPRLSLAAVNPAALELGIARDKLVVLLAESNFNLWMADRP
>Mature_537_residues
SYPNPWKLAAVCLAAASAYLWIANRRTAAEDLAFVPLTSGAALTASPAISADGQLAAYASDRDARNLELYVQPIPSGMPV
RLTRTPEDESEPAFSPDSGSLAFRSEKGGGGIYVMPARGGDAKLLAQGGRDPRYSPDGKWIAYWDQDAAWVIPSNGGTAR
KIFATPGARHPIWSPDGALVLAQANNEFVVGAVGVAPAPAGIPGRLQADSPQWTAGGLFFVERTGWVRNIWRIPLDARGR
ATAAAMRVTSGPESIGDVAVSRDGRILFTAGSQNFQVWGLPLDANTGKPAGVPQRLTDGAATLEHPAISADGRLLLYDAQ
RYGLQQLFLRDLASGEERVAAAKPAGVSGGQFLRGGRIIYGSGGDVYVTGESRKLAAGGRPLAVDRKEEIALVRSPSSLD
ALNLKSLERVPLLRAAISQAAFSPDDRWIAFSTGGRIYRAPNRGLQEIPRSEWLPVAAGDKPRFSPDGSLLYFVADGGIH
AVRLATPGEPFSVWEPREPRLSLAAVNPAALELGIARDKLVVLLAESNFNLWMADRP

Specific function: Involved in the tonB-independent uptake of proteins [H]

COG id: COG0823

COG function: function code U; Periplasmic component of the Tol biopolymer transport system

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tolB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR014167
- InterPro:   IPR007195
- InterPro:   IPR015943 [H]

Pfam domain/function: PF07676 PD40; PF04052 TolB_N [H]

EC number: NA

Molecular weight: Translated: 57200; Mature: 57069

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYPNPWKLAAVCLAAASAYLWIANRRTAAEDLAFVPLTSGAALTASPAISADGQLAAYA
CCCCCHHHHHHHHHHHHCEEEEEECCCCCCCCEEEEEECCCCEEEECCCCCCCCCEEEEE
SDRDARNLELYVQPIPSGMPVRLTRTPEDESEPAFSPDSGSLAFRSEKGGGGIYVMPARG
CCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCC
GDAKLLAQGGRDPRYSPDGKWIAYWDQDAAWVIPSNGGTARKIFATPGARHPIWSPDGAL
CCEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCE
VLAQANNEFVVGAVGVAPAPAGIPGRLQADSPQWTAGGLFFVERTGWVRNIWRIPLDARG
EEEECCCCEEEEEECCCCCCCCCCCCEECCCCCEECCCEEEEECCCCEEEEEECCCCCCC
RATAAAMRVTSGPESIGDVAVSRDGRILFTAGSQNFQVWGLPLDANTGKPAGVPQRLTDG
CCEEEEEEECCCCCCCCCEEEECCCEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHCCC
AATLEHPAISADGRLLLYDAQRYGLQQLFLRDLASGEERVAAAKPAGVSGGQFLRGGRII
CCCCCCCCCCCCCEEEEEECHHHCHHHHHHHHHCCCCHHEEECCCCCCCCCCEEECCEEE
YGSGGDVYVTGESRKLAAGGRPLAVDRKEEIALVRSPSSLDALNLKSLERVPLLRAAISQ
ECCCCCEEEECCCEEEECCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
AAFSPDDRWIAFSTGGRIYRAPNRGLQEIPRSEWLPVAAGDKPRFSPDGSLLYFVADGGI
HCCCCCCCEEEEECCCEEEECCCCCHHHCCHHHCEEEECCCCCCCCCCCCEEEEEECCCE
HAVRLATPGEPFSVWEPREPRLSLAAVNPAALELGIARDKLVVLLAESNFNLWMADRP
EEEEEECCCCCCCCCCCCCCCEEEEECCHHHEEEEECCCEEEEEEEECCCEEEEECCC
>Mature Secondary Structure 
SYPNPWKLAAVCLAAASAYLWIANRRTAAEDLAFVPLTSGAALTASPAISADGQLAAYA
CCCCHHHHHHHHHHHHCEEEEEECCCCCCCCEEEEEECCCCEEEECCCCCCCCCEEEEE
SDRDARNLELYVQPIPSGMPVRLTRTPEDESEPAFSPDSGSLAFRSEKGGGGIYVMPARG
CCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCC
GDAKLLAQGGRDPRYSPDGKWIAYWDQDAAWVIPSNGGTARKIFATPGARHPIWSPDGAL
CCEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCE
VLAQANNEFVVGAVGVAPAPAGIPGRLQADSPQWTAGGLFFVERTGWVRNIWRIPLDARG
EEEECCCCEEEEEECCCCCCCCCCCCEECCCCCEECCCEEEEECCCCEEEEEECCCCCCC
RATAAAMRVTSGPESIGDVAVSRDGRILFTAGSQNFQVWGLPLDANTGKPAGVPQRLTDG
CCEEEEEEECCCCCCCCCEEEECCCEEEEEECCCCEEEEEEEEECCCCCCCCCCHHHCCC
AATLEHPAISADGRLLLYDAQRYGLQQLFLRDLASGEERVAAAKPAGVSGGQFLRGGRII
CCCCCCCCCCCCCEEEEEECHHHCHHHHHHHHHCCCCHHEEECCCCCCCCCCEEECCEEE
YGSGGDVYVTGESRKLAAGGRPLAVDRKEEIALVRSPSSLDALNLKSLERVPLLRAAISQ
ECCCCCEEEECCCEEEECCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
AAFSPDDRWIAFSTGGRIYRAPNRGLQEIPRSEWLPVAAGDKPRFSPDGSLLYFVADGGI
HCCCCCCCEEEEECCCEEEECCCCCHHHCCHHHCEEEECCCCCCCCCCCCEEEEEECCCE
HAVRLATPGEPFSVWEPREPRLSLAAVNPAALELGIARDKLVVLLAESNFNLWMADRP
EEEEEECCCCCCCCCCCCCCCEEEEECCHHHEEEEECCCEEEEEEEECCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA