Click here to switch to the map view.

The map label for this gene is 116624612

Identifier: 116624612

GI number: 116624612

Start: 6940527

End: 6940919

Strand: Direct

Name: 116624612

Synonym: Acid_5536

Alternate gene names: NA

Gene position: 6940527-6940919 (Clockwise)

Preceding gene: 116624599

Following gene: 116624613

Centisome position: 69.64

GC content: 62.09

Gene sequence:

>393_bases
ATGCGATCACGCGTCCCGCATCCCGCCGTCCCTGACGGCGACCCGAAAATTGTCAGCCTGGAATCAGCGGTAGAAGATCT
CGGGCTCTCCGTACGCACGCGCAACGCCCTGCGCGCCATCGGCTGCGACACCGTGGAAAATGTGCTGGCGCTTGATCTCG
GCTCGTCCGTCCGCGGCCTGGGCCGAAAGACCAAGGAAGAATTGCTGGTCGCCCTCGAACTCAAGGGCTTCCGCCATCCC
GCATTGGAGCAACAGCCGGCCTCCGAAATCCAGGTGTTGGAACGCAGCCTCGATAAAATGCAGACCCGCGTCGATGCCGC
CCTCGTCTCCATCTCCAAAGAGATCCGCCTCCTTAAACAACGCCTCCGCAAAACCCGCCCCGGGGTATCATGA

Upstream 100 bases:

>100_bases
CAGCACGGCCCGCTGGCTCCCCCTCATAATCCGAATCCGGCGAATCAATTGTTTCTATTGGAAGTGGCGCGCGGCCGATG
CCTACAATACGTGCGAGGAA

Downstream 100 bases:

>100_bases
CCATTCTCAATGTCCTACCCGAACCCCTGGAAATTGGCAGCCGTCTGCCTGGCGGCAGCCAGCGCCTACCTGTGGATCGC
AAACCGGCGTACCGCGGCTG

Product: RNA polymerase subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MRSRVPHPAVPDGDPKIVSLESAVEDLGLSVRTRNALRAIGCDTVENVLALDLGSSVRGLGRKTKEELLVALELKGFRHP
ALEQQPASEIQVLERSLDKMQTRVDAALVSISKEIRLLKQRLRKTRPGVS

Sequences:

>Translated_130_residues
MRSRVPHPAVPDGDPKIVSLESAVEDLGLSVRTRNALRAIGCDTVENVLALDLGSSVRGLGRKTKEELLVALELKGFRHP
ALEQQPASEIQVLERSLDKMQTRVDAALVSISKEIRLLKQRLRKTRPGVS
>Mature_130_residues
MRSRVPHPAVPDGDPKIVSLESAVEDLGLSVRTRNALRAIGCDTVENVLALDLGSSVRGLGRKTKEELLVALELKGFRHP
ALEQQPASEIQVLERSLDKMQTRVDAALVSISKEIRLLKQRLRKTRPGVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14298; Mature: 14298

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSRVPHPAVPDGDPKIVSLESAVEDLGLSVRTRNALRAIGCDTVENVLALDLGSSVRGL
CCCCCCCCCCCCCCCCEEEHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHCCHHHHHH
GRKTKEELLVALELKGFRHPALEQQPASEIQVLERSLDKMQTRVDAALVSISKEIRLLKQ
CHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLRKTRPGVS
HHHHCCCCCC
>Mature Secondary Structure
MRSRVPHPAVPDGDPKIVSLESAVEDLGLSVRTRNALRAIGCDTVENVLALDLGSSVRGL
CCCCCCCCCCCCCCCCEEEHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHCCHHHHHH
GRKTKEELLVALELKGFRHPALEQQPASEIQVLERSLDKMQTRVDAALVSISKEIRLLKQ
CHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLRKTRPGVS
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA