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The map label for this gene is yibD [C]

Identifier: 116624546

GI number: 116624546

Start: 6857929

End: 6858777

Strand: Reverse

Name: yibD [C]

Synonym: Acid_5470

Alternate gene names: 116624546

Gene position: 6858777-6857929 (Counterclockwise)

Preceding gene: 116624547

Following gene: 116624545

Centisome position: 68.82

GC content: 65.25

Gene sequence:

>849_bases
TTGAAACTCAGCGTCGTGATCATCTCGCGCAATGAAGGCGCCGAGCTGCGCCGCACCGTTGAGAGCTTCCGCGCCACCTT
GCCGCAGCGCGCGGAAATCGTGATTGTAGACGACCGTTCCACCGATGGTTCCACCCGCGGGTTGCGCCGCGTCATCAAGA
CCAACGGTATCGGCGTGGCGTGCGCCCGCAATCTTGGCGTCTCCAAGACTACCGGCGACATGCTGTTCTTCGCTGACGCC
CACATCCGGCTGGAGAAGAATTGGTGGCAGCCGCTGGCCGAGGTTCTCGAGGATCGCAAGGTCGCCGCCGTGGCTCCCGC
CGTCACTCATCTTCCGGCCACGCGCCGCCGCGGCTTCGGACTGACCTTCACCGGCCCCGATCTCGACGCGCGCTGGCTGC
CGCGGCAGGGCGTGACTCCTTTCTCCGCGCCGATTCTCCCCGGCTGCTCGCTCATGATGCGCCGCGCGACCTTCGATGCC
GTCGGCGGCTGGGATGGCGGCCTGCTCCATCGCGGCGGCGTGGATAACGAAATGTCTGTGCGGCTCTGGCTGCTCGGCTA
TGAACTGATGGTGGCTCCGCAGGTCGTAGTGCCGCATCTCTTTCGCAGTGCTTCGCCCTATCCGGTAGGCTGGCCGCAGT
ACCTCCACAACCGCTTGCGCCTCGCCTTCGTCCATCTCAACGCGGCGCGCCTCGCCAGAGTAGTCAAGGCCCTCCACAAA
GAACCCGCTTTCGGCGAAGCTATGGAACTGCTGGTGTCGAGCGACATCTCCGCGCGCCGCCGCGAGCTGCTCGCCCGCCG
CGCGCACACTGACGACTGGTTCTTTGAAAGGTTCGGCCTCAAATGGTAA

Upstream 100 bases:

>100_bases
CCAACACCACCGGGTTGACTGGCCTTTCGGTGGCCGATGGCCGCATGGTCTTTTCCTTCGGCGAACTCACCGGAAATATC
TGGCTGCTTGAGACACCGCG

Downstream 100 bases:

>100_bases
AGGACGATTTTTCGCCGTTCAAGCGCCACAGCGGCTGGTTTTCTCAGTGCGCCTGCTACCCCCTCCGCGATGGGCACCCC
GGCCGGCTCGAGTCCTATTG

Product: glycosyl transferase family protein

Products: UDP; N-acetyl-D-galactosaminyl-polypeptide

Alternate protein names: Polypeptide N-Acetylgalactosaminyltransferase; Glycosyltransferase; Glycosyl Transferase

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MKLSVVIISRNEGAELRRTVESFRATLPQRAEIVIVDDRSTDGSTRGLRRVIKTNGIGVACARNLGVSKTTGDMLFFADA
HIRLEKNWWQPLAEVLEDRKVAAVAPAVTHLPATRRRGFGLTFTGPDLDARWLPRQGVTPFSAPILPGCSLMMRRATFDA
VGGWDGGLLHRGGVDNEMSVRLWLLGYELMVAPQVVVPHLFRSASPYPVGWPQYLHNRLRLAFVHLNAARLARVVKALHK
EPAFGEAMELLVSSDISARRRELLARRAHTDDWFFERFGLKW

Sequences:

>Translated_282_residues
MKLSVVIISRNEGAELRRTVESFRATLPQRAEIVIVDDRSTDGSTRGLRRVIKTNGIGVACARNLGVSKTTGDMLFFADA
HIRLEKNWWQPLAEVLEDRKVAAVAPAVTHLPATRRRGFGLTFTGPDLDARWLPRQGVTPFSAPILPGCSLMMRRATFDA
VGGWDGGLLHRGGVDNEMSVRLWLLGYELMVAPQVVVPHLFRSASPYPVGWPQYLHNRLRLAFVHLNAARLARVVKALHK
EPAFGEAMELLVSSDISARRRELLARRAHTDDWFFERFGLKW
>Mature_282_residues
MKLSVVIISRNEGAELRRTVESFRATLPQRAEIVIVDDRSTDGSTRGLRRVIKTNGIGVACARNLGVSKTTGDMLFFADA
HIRLEKNWWQPLAEVLEDRKVAAVAPAVTHLPATRRRGFGLTFTGPDLDARWLPRQGVTPFSAPILPGCSLMMRRATFDA
VGGWDGGLLHRGGVDNEMSVRLWLLGYELMVAPQVVVPHLFRSASPYPVGWPQYLHNRLRLAFVHLNAARLARVVKALHK
EPAFGEAMELLVSSDISARRRELLARRAHTDDWFFERFGLKW

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI115298684, Length=311, Percent_Identity=27.9742765273312, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI190014583, Length=251, Percent_Identity=27.0916334661355, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI153792095, Length=258, Percent_Identity=31.0077519379845, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI153266878, Length=287, Percent_Identity=28.2229965156794, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI8393412, Length=311, Percent_Identity=28.2958199356913, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI34452725, Length=305, Percent_Identity=28.8524590163934, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI145309313, Length=260, Percent_Identity=30, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI13124891, Length=260, Percent_Identity=30.3846153846154, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI60498976, Length=256, Percent_Identity=27.734375, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI22538495, Length=256, Percent_Identity=24.609375, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI32698686, Length=296, Percent_Identity=27.027027027027, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI169790926, Length=258, Percent_Identity=27.5193798449612, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI270265827, Length=256, Percent_Identity=26.171875, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI270265820, Length=256, Percent_Identity=26.171875, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17553826, Length=252, Percent_Identity=27.7777777777778, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17553814, Length=312, Percent_Identity=28.525641025641, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71996090, Length=255, Percent_Identity=26.2745098039216, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI71996085, Length=255, Percent_Identity=26.2745098039216, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17561826, Length=241, Percent_Identity=28.6307053941909, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71993517, Length=294, Percent_Identity=27.5510204081633, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71993511, Length=294, Percent_Identity=27.5510204081633, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI71993513, Length=294, Percent_Identity=27.5510204081633, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI71987784, Length=236, Percent_Identity=28.3898305084746, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71987788, Length=236, Percent_Identity=28.3898305084746, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71987795, Length=236, Percent_Identity=28.3898305084746, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71994065, Length=266, Percent_Identity=26.3157894736842, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115533034, Length=239, Percent_Identity=27.1966527196653, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115533032, Length=239, Percent_Identity=27.1966527196653, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI72000999, Length=234, Percent_Identity=28.6324786324786, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI72000997, Length=234, Percent_Identity=28.6324786324786, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21358257, Length=305, Percent_Identity=27.8688524590164, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24584318, Length=259, Percent_Identity=27.4131274131274, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI19921720, Length=251, Percent_Identity=27.0916334661355, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI45550844, Length=233, Percent_Identity=29.1845493562232, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007284, Length=258, Percent_Identity=29.8449612403101, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24581865, Length=261, Percent_Identity=30.2681992337165, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI161077158, Length=263, Percent_Identity=27.3764258555133, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24654219, Length=263, Percent_Identity=27.3764258555133, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI161077156, Length=263, Percent_Identity=27.3764258555133, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI161077154, Length=263, Percent_Identity=27.3764258555133, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24656265, Length=313, Percent_Identity=26.517571884984, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24656262, Length=313, Percent_Identity=26.517571884984, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.4.1.41

Molecular weight: Translated: 31653; Mature: 31653

Theoretical pI: Translated: 11.06; Mature: 11.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSVVIISRNEGAELRRTVESFRATLPQRAEIVIVDDRSTDGSTRGLRRVIKTNGIGVA
CEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEE
CARNLGVSKTTGDMLFFADAHIRLEKNWWQPLAEVLEDRKVAAVAPAVTHLPATRRRGFG
EECCCCCCCCCCCEEEEECCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCE
LTFTGPDLDARWLPRQGVTPFSAPILPGCSLMMRRATFDAVGGWDGGLLHRGGVDNEMSV
EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCEE
RLWLLGYELMVAPQVVVPHLFRSASPYPVGWPQYLHNRLRLAFVHLNAARLARVVKALHK
EEEEECHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHEEEEEEECHHHHHHHHHHHHC
EPAFGEAMELLVSSDISARRRELLARRAHTDDWFFERFGLKW
CCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHCCCCC
>Mature Secondary Structure
MKLSVVIISRNEGAELRRTVESFRATLPQRAEIVIVDDRSTDGSTRGLRRVIKTNGIGVA
CEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEE
CARNLGVSKTTGDMLFFADAHIRLEKNWWQPLAEVLEDRKVAAVAPAVTHLPATRRRGFG
EECCCCCCCCCCCEEEEECCEEEECCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHCCCE
LTFTGPDLDARWLPRQGVTPFSAPILPGCSLMMRRATFDAVGGWDGGLLHRGGVDNEMSV
EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCEE
RLWLLGYELMVAPQVVVPHLFRSASPYPVGWPQYLHNRLRLAFVHLNAARLARVVKALHK
EEEEECHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHEEEEEEECHHHHHHHHHHHHC
EPAFGEAMELLVSSDISARRRELLARRAHTDDWFFERFGLKW
CCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: UDP-N-acetyl-D-galactosamine; polypeptide

Specific reaction: UDP-N-acetyl-D-galactosamine + polypeptide = UDP + N-acetyl-D-galactosaminyl-polypeptide

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA