Click here to switch to the map view.

The map label for this gene is fimZ [H]

Identifier: 116624170

GI number: 116624170

Start: 6423685

End: 6424326

Strand: Direct

Name: fimZ [H]

Synonym: Acid_5086

Alternate gene names: 116624170

Gene position: 6423685-6424326 (Clockwise)

Preceding gene: 116624169

Following gene: 116624171

Centisome position: 64.46

GC content: 62.46

Gene sequence:

>642_bases
GTGACAGATCAGGCGCCGATCCGCATCCTGCTGGTGGACGATCATTCCTTGTTTCGGGAGAGCCTGGCGCAAGCCTTGTC
GTCGGAGGAGGCGTTCAAGGTAGCGCATTGCGCAAGCATCCGCGAGGCGCTGATGGAGCTGGTGCACCAGCCGTTCGACC
TGGTCCTGCTGGATCACGATCTCGGCAGCGAGCGCGCGTCGCAGTTCCTGCCGGCGGCGCGGCAGCTCGGCTATGAAGGC
CGGGTGCTAGTGGTCACGGCGTGGGTGAGCGATACCGAAGCCCGCAGGCTCATGCGCCAGGGCGTGAACGGAATCTTTTT
GAAACAGGGACCGCTCAGCGAACTTTCGGGCGCCATACGCTCGGTTGCCGGCGGCGAAACGTGGATTGACCGTTCCCTCA
CGGCCATCGCCGAAGACCCGTGCGCCACTCCACAAGCCGCCGTTCCGGTCTTCAACGAGCGCCAGCGCAAGGTGCTGCGG
TTCGTCCTGGAGGGACTCTCCAACAAGGAGATCGCCTGGCGCCTGCAGATTTCAGAAAGCTATGTGAAAGCCATCTTGCA
GAGCCTCTTCCAGAAAACCGGGGTGCGTACGCGTGGTCAACTGGTCCGCGTTGCGGTGGAACAGTACGATGACCAACTCT
AA

Upstream 100 bases:

>100_bases
GGCGGGGGGCTGCGTTACGATTCCGGGCAGGGTCCAGGCAGCTGCTTTACAGTAGAGCTATGGCCGGTGGAGAATGCATT
AGAAGGGTGAGTTGCCACTA

Downstream 100 bases:

>100_bases
TTGTACGAAAGATACATTTTCATCCAACGCCCCGCTGGGCTAACGTTGAACATACTCAAAGCCGGACTCTAACCGGCAAC
CGAGGCAATAGGGGTGAGTG

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MTDQAPIRILLVDDHSLFRESLAQALSSEEAFKVAHCASIREALMELVHQPFDLVLLDHDLGSERASQFLPAARQLGYEG
RVLVVTAWVSDTEARRLMRQGVNGIFLKQGPLSELSGAIRSVAGGETWIDRSLTAIAEDPCATPQAAVPVFNERQRKVLR
FVLEGLSNKEIAWRLQISESYVKAILQSLFQKTGVRTRGQLVRVAVEQYDDQL

Sequences:

>Translated_213_residues
MTDQAPIRILLVDDHSLFRESLAQALSSEEAFKVAHCASIREALMELVHQPFDLVLLDHDLGSERASQFLPAARQLGYEG
RVLVVTAWVSDTEARRLMRQGVNGIFLKQGPLSELSGAIRSVAGGETWIDRSLTAIAEDPCATPQAAVPVFNERQRKVLR
FVLEGLSNKEIAWRLQISESYVKAILQSLFQKTGVRTRGQLVRVAVEQYDDQL
>Mature_212_residues
TDQAPIRILLVDDHSLFRESLAQALSSEEAFKVAHCASIREALMELVHQPFDLVLLDHDLGSERASQFLPAARQLGYEGR
VLVVTAWVSDTEARRLMRQGVNGIFLKQGPLSELSGAIRSVAGGETWIDRSLTAIAEDPCATPQAAVPVFNERQRKVLRF
VLEGLSNKEIAWRLQISESYVKAILQSLFQKTGVRTRGQLVRVAVEQYDDQL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=202, Percent_Identity=26.2376237623762, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1788521, Length=208, Percent_Identity=28.8461538461538, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787473, Length=188, Percent_Identity=28.7234042553192, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23770; Mature: 23638

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQAPIRILLVDDHSLFRESLAQALSSEEAFKVAHCASIREALMELVHQPFDLVLLDHD
CCCCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
LGSERASQFLPAARQLGYEGRVLVVTAWVSDTEARRLMRQGVNGIFLKQGPLSELSGAIR
CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEECCCCHHHHHHHHH
SVAGGETWIDRSLTAIAEDPCATPQAAVPVFNERQRKVLRFVLEGLSNKEIAWRLQISES
HHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECHH
YVKAILQSLFQKTGVRTRGQLVRVAVEQYDDQL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TDQAPIRILLVDDHSLFRESLAQALSSEEAFKVAHCASIREALMELVHQPFDLVLLDHD
CCCCCEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
LGSERASQFLPAARQLGYEGRVLVVTAWVSDTEARRLMRQGVNGIFLKQGPLSELSGAIR
CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEECCCCHHHHHHHHH
SVAGGETWIDRSLTAIAEDPCATPQAAVPVFNERQRKVLRFVLEGLSNKEIAWRLQISES
HHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECHH
YVKAILQSLFQKTGVRTRGQLVRVAVEQYDDQL
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]