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The map label for this gene is ypfJ [H]

Identifier: 116623980

GI number: 116623980

Start: 6173244

End: 6174032

Strand: Reverse

Name: ypfJ [H]

Synonym: Acid_4892

Alternate gene names: 116623980

Gene position: 6174032-6173244 (Counterclockwise)

Preceding gene: 116623981

Following gene: 116623979

Centisome position: 61.95

GC content: 62.61

Gene sequence:

>789_bases
ATGGGCGGCGCACCCCTAGGTATCGGCGGGATGATCGTGCTGGTGCTGTTGAGCCTGATCTTCAAGCGCGATTTCGTCTC
GATGTTTTCCGGAAGCCAGGGGGTCGCACCGACCATCAACCAGGCTTCGCGCAGCGTTGAGGGAGGTCGGGCGGAAGCCA
AGCAGGTGCAATTCGTATCCTTCGTCCTGGACGATGCCCAGAGCACCTGGGACAGGGTTCTGCCTCAGCAGAGCAAAGTG
CCATACCGGCACGCCAAACTTGTGTTGTTCCGCGACGCGACCGAGTCCGCTTGCGGCCTGGCGCAATCGGCCACCGGACC
TTTCTATTGTCCTGCCGACGAAAAGGTCTATGTTGACCTGGGCTTCTTTGACGAGTTGGGCAACCGGTTCGGCGCGCCCG
GCGAATTTGCGCAGGCGTATGTGCTGGCACACGAAATCGGGCATCACGTTCAAAAGGTTCTTGGCATCTCCGGGAAGGTG
CATGCACTGCAGCAGAGCGATCCCTCGGAGGCTAACCCGCTTTCGGTGAGCCTGGAATTGCAGGCGGATTGCCTGGCCGG
CGTCTGGGCAAACTCGACCGCGCAGCGCGACCTGATCGAACAACAGGACGTGGAGGCGGGGATACGAGCCGCCGGCGCGG
TAGGTGACGACCGGCTGCAGCGCATGGCGGGCCGGCGGGTGAGTCCGGAAAACTTCACCCATGGTTCATCGGCGCAGCGC
GCGGAATGGTTTCAGCGAGGGCTTGCAAGCGGCGACCTCGCGCAGTGCAACACCTTCGCCGGGAGATGA

Upstream 100 bases:

>100_bases
TGCGCACAGGTGAATTTGGAGACCAGGAGGAGTTATGCGGTGGACTCCCGGCGATGTAAGCGGCGATCTCGAGGACCGGC
GCGGGTCAAGTGGACCGCGC

Downstream 100 bases:

>100_bases
TGCGAGTGCCGCCTGGTCTTACTATCCGGCGCTTGCTGAGGCCACATGCCAAGAGCCTGGCGGTCGGAATCGCCGCCGTA
GTTGTAGAAGGCATGGCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MGGAPLGIGGMIVLVLLSLIFKRDFVSMFSGSQGVAPTINQASRSVEGGRAEAKQVQFVSFVLDDAQSTWDRVLPQQSKV
PYRHAKLVLFRDATESACGLAQSATGPFYCPADEKVYVDLGFFDELGNRFGAPGEFAQAYVLAHEIGHHVQKVLGISGKV
HALQQSDPSEANPLSVSLELQADCLAGVWANSTAQRDLIEQQDVEAGIRAAGAVGDDRLQRMAGRRVSPENFTHGSSAQR
AEWFQRGLASGDLAQCNTFAGR

Sequences:

>Translated_262_residues
MGGAPLGIGGMIVLVLLSLIFKRDFVSMFSGSQGVAPTINQASRSVEGGRAEAKQVQFVSFVLDDAQSTWDRVLPQQSKV
PYRHAKLVLFRDATESACGLAQSATGPFYCPADEKVYVDLGFFDELGNRFGAPGEFAQAYVLAHEIGHHVQKVLGISGKV
HALQQSDPSEANPLSVSLELQADCLAGVWANSTAQRDLIEQQDVEAGIRAAGAVGDDRLQRMAGRRVSPENFTHGSSAQR
AEWFQRGLASGDLAQCNTFAGR
>Mature_261_residues
GGAPLGIGGMIVLVLLSLIFKRDFVSMFSGSQGVAPTINQASRSVEGGRAEAKQVQFVSFVLDDAQSTWDRVLPQQSKVP
YRHAKLVLFRDATESACGLAQSATGPFYCPADEKVYVDLGFFDELGNRFGAPGEFAQAYVLAHEIGHHVQKVLGISGKVH
ALQQSDPSEANPLSVSLELQADCLAGVWANSTAQRDLIEQQDVEAGIRAAGAVGDDRLQRMAGRRVSPENFTHGSSAQRA
EWFQRGLASGDLAQCNTFAGR

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=258, Percent_Identity=47.2868217054264, Blast_Score=242, Evalue=2e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 28110; Mature: 27979

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGAPLGIGGMIVLVLLSLIFKRDFVSMFSGSQGVAPTINQASRSVEGGRAEAKQVQFVS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHH
FVLDDAQSTWDRVLPQQSKVPYRHAKLVLFRDATESACGLAQSATGPFYCPADEKVYVDL
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHCCHHCCCCCEECCCCCEEEEEE
GFFDELGNRFGAPGEFAQAYVLAHEIGHHVQKVLGISGKVHALQQSDPSEANPLSVSLEL
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEE
QADCLAGVWANSTAQRDLIEQQDVEAGIRAAGAVGDDRLQRMAGRRVSPENFTHGSSAQR
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHH
AEWFQRGLASGDLAQCNTFAGR
HHHHHHCCCCCCHHHHHHCCCC
>Mature Secondary Structure 
GGAPLGIGGMIVLVLLSLIFKRDFVSMFSGSQGVAPTINQASRSVEGGRAEAKQVQFVS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHH
FVLDDAQSTWDRVLPQQSKVPYRHAKLVLFRDATESACGLAQSATGPFYCPADEKVYVDL
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHCCHHCCCCCEECCCCCEEEEEE
GFFDELGNRFGAPGEFAQAYVLAHEIGHHVQKVLGISGKVHALQQSDPSEANPLSVSLEL
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEE
QADCLAGVWANSTAQRDLIEQQDVEAGIRAAGAVGDDRLQRMAGRRVSPENFTHGSSAQR
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHH
AEWFQRGLASGDLAQCNTFAGR
HHHHHHCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]