Click here to switch to the map view.

The map label for this gene is yiaD [H]

Identifier: 116623978

GI number: 116623978

Start: 6170107

End: 6171273

Strand: Reverse

Name: yiaD [H]

Synonym: Acid_4890

Alternate gene names: 116623978

Gene position: 6171273-6170107 (Counterclockwise)

Preceding gene: 116623979

Following gene: 116623977

Centisome position: 61.93

GC content: 62.13

Gene sequence:

>1167_bases
ATGTCAGATTCGATGTTCGGTTCCTTATTAAACATGTTGGACAAGCACACCGTTGGCGAGGTGGCTAGCGCACTCGGGCA
ACCCCAGACTTCGGTCGCGCGGGGCATGGAGTCATCAATCGCCGCGATACTGGGCGGCTTGGCCGGCAAGGCCGAAGATA
CCGGCGCATTGCGAAGAATACTCGACATTGTACCGAGCACCTCCGGACCCATCTCCTGGGCGCAGATCGCAAGCGGCGTT
GCGGACCCTGACTCATCATTCATGGCAATCGGCAAGCGCCTGCTGCCGTCCATATTCGGAAGCGGAGAGAAAACCGTCAC
GAGCGCCATCAGCCGGGAATCGGCTTTACCATCCGGGACGGTCGCCACCCTGCTATCGATGGCGGCGCCGGTGGTGATGA
GCTTCATCAGCAAGCAAGTTCGCGACGGCGGAATGACCATGGGCGGCCTGGCCGCCGCACTGCAGCGGGAGAGCGCCACG
ATCAAGCGTGCATTGCCCGCCGGATTGGGCGACCTGTTCTGGCCCACCAGGGAAACGGCAAGTACCGTGTCTCCGGTGGT
GGCCCAGACAGTCCAAAAAGAGACCTCCTCGAACTGGCTTCCGGTACTCGCCATCGCCGGGTTGGGGTTGGGCCTGCTTT
GGTTCCTGGCTCCCAGACACCGGCCGACGGTCGCGCAAATCGTGCCGTCGGTGCCAATCGGAACGGCCAACCGGTTTGCG
GTCCCGGTGGCCAAGACGTGCGTGCTGCCGGCGAACGTTAAACTGCCGGAGGGCGGCGCCGCGGCGCGGCTCCTCACCTT
CATCCAAAGCCCCGAATCAAGGAACACAACCTGGTTCACGATGGACCAGATTGCATTCGACTCGGGATCGGCCACGCTCA
AGCCCGCATCGCAAACCCAACTCAATAACATTGCGACGGTGCTCAATAATTGTCCAGGAGTCCGGCTGGATATTGCCGGC
TATACCGACAACGTGGGGTCGGCAGAGTCGAATCTCCGCCTGTCCCGCAATCGGGCCAACAGCGTTGTAGCCGTTCTGGT
GAAGGAGGGTGTCCCTCGAGAGCGGTTTAACGCCGAGGGCTACGGCGAAGAAGACCCGGTCGCGGACAACTCAATCGAGC
AGGGCCGCGCCCAGAACAGACGCGTGGCGATGCGTGTCGCGCCTTAG

Upstream 100 bases:

>100_bases
TACTAAACCCGATATTACATCGTGTTAATGCCCGACGAATCTCTTCCGGTAAAGGGCCAATGAAATCTCGCCAAGGCTGG
GCAAACCGAAGGAGGCAGAA

Downstream 100 bases:

>100_bases
CGCAGCTGAGTTCAGGCAGTGTCAACAAGGATAGCAAGATAAGGGAATGTGTAAATAAGGAGCTACGATGACTTACGAGA
AGATAGTCACATTGTATGAC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MSDSMFGSLLNMLDKHTVGEVASALGQPQTSVARGMESSIAAILGGLAGKAEDTGALRRILDIVPSTSGPISWAQIASGV
ADPDSSFMAIGKRLLPSIFGSGEKTVTSAISRESALPSGTVATLLSMAAPVVMSFISKQVRDGGMTMGGLAAALQRESAT
IKRALPAGLGDLFWPTRETASTVSPVVAQTVQKETSSNWLPVLAIAGLGLGLLWFLAPRHRPTVAQIVPSVPIGTANRFA
VPVAKTCVLPANVKLPEGGAAARLLTFIQSPESRNTTWFTMDQIAFDSGSATLKPASQTQLNNIATVLNNCPGVRLDIAG
YTDNVGSAESNLRLSRNRANSVVAVLVKEGVPRERFNAEGYGEEDPVADNSIEQGRAQNRRVAMRVAP

Sequences:

>Translated_388_residues
MSDSMFGSLLNMLDKHTVGEVASALGQPQTSVARGMESSIAAILGGLAGKAEDTGALRRILDIVPSTSGPISWAQIASGV
ADPDSSFMAIGKRLLPSIFGSGEKTVTSAISRESALPSGTVATLLSMAAPVVMSFISKQVRDGGMTMGGLAAALQRESAT
IKRALPAGLGDLFWPTRETASTVSPVVAQTVQKETSSNWLPVLAIAGLGLGLLWFLAPRHRPTVAQIVPSVPIGTANRFA
VPVAKTCVLPANVKLPEGGAAARLLTFIQSPESRNTTWFTMDQIAFDSGSATLKPASQTQLNNIATVLNNCPGVRLDIAG
YTDNVGSAESNLRLSRNRANSVVAVLVKEGVPRERFNAEGYGEEDPVADNSIEQGRAQNRRVAMRVAP
>Mature_387_residues
SDSMFGSLLNMLDKHTVGEVASALGQPQTSVARGMESSIAAILGGLAGKAEDTGALRRILDIVPSTSGPISWAQIASGVA
DPDSSFMAIGKRLLPSIFGSGEKTVTSAISRESALPSGTVATLLSMAAPVVMSFISKQVRDGGMTMGGLAAALQRESATI
KRALPAGLGDLFWPTRETASTVSPVVAQTVQKETSSNWLPVLAIAGLGLGLLWFLAPRHRPTVAQIVPSVPIGTANRFAV
PVAKTCVLPANVKLPEGGAAARLLTFIQSPESRNTTWFTMDQIAFDSGSATLKPASQTQLNNIATVLNNCPGVRLDIAGY
TDNVGSAESNLRLSRNRANSVVAVLVKEGVPRERFNAEGYGEEDPVADNSIEQGRAQNRRVAMRVAP

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=107, Percent_Identity=42.9906542056075, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1788957, Length=141, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787191, Length=128, Percent_Identity=34.375, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 40589; Mature: 40458

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSMFGSLLNMLDKHTVGEVASALGQPQTSVARGMESSIAAILGGLAGKAEDTGALRRI
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LDIVPSTSGPISWAQIASGVADPDSSFMAIGKRLLPSIFGSGEKTVTSAISRESALPSGT
HHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHH
VATLLSMAAPVVMSFISKQVRDGGMTMGGLAAALQRESATIKRALPAGLGDLFWPTRETA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHH
STVSPVVAQTVQKETSSNWLPVLAIAGLGLGLLWFLAPRHRPTVAQIVPSVPIGTANRFA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCEE
VPVAKTCVLPANVKLPEGGAAARLLTFIQSPESRNTTWFTMDQIAFDSGSATLKPASQTQ
CCHHHHEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHEEECCCCCCCCCCHHHH
LNNIATVLNNCPGVRLDIAGYTDNVGSAESNLRLSRNRANSVVAVLVKEGVPRERFNAEG
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEHHCCHHHHHHHHHHCCCCHHHCCCCC
YGEEDPVADNSIEQGRAQNRRVAMRVAP
CCCCCCCCCCCHHHHHCCCCEEEEEECC
>Mature Secondary Structure 
SDSMFGSLLNMLDKHTVGEVASALGQPQTSVARGMESSIAAILGGLAGKAEDTGALRRI
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LDIVPSTSGPISWAQIASGVADPDSSFMAIGKRLLPSIFGSGEKTVTSAISRESALPSGT
HHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHH
VATLLSMAAPVVMSFISKQVRDGGMTMGGLAAALQRESATIKRALPAGLGDLFWPTRETA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHH
STVSPVVAQTVQKETSSNWLPVLAIAGLGLGLLWFLAPRHRPTVAQIVPSVPIGTANRFA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCEE
VPVAKTCVLPANVKLPEGGAAARLLTFIQSPESRNTTWFTMDQIAFDSGSATLKPASQTQ
CCHHHHEECCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHEEECCCCCCCCCCHHHH
LNNIATVLNNCPGVRLDIAGYTDNVGSAESNLRLSRNRANSVVAVLVKEGVPRERFNAEG
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEHHCCHHHHHHHHHHCCCCHHHCCCCC
YGEEDPVADNSIEQGRAQNRRVAMRVAP
CCCCCCCCCCCHHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]