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The map label for this gene is epsD [H]

Identifier: 116623945

GI number: 116623945

Start: 6134863

End: 6136149

Strand: Direct

Name: epsD [H]

Synonym: Acid_4857

Alternate gene names: 116623945

Gene position: 6134863-6136149 (Clockwise)

Preceding gene: 116623944

Following gene: 116623946

Centisome position: 61.56

GC content: 63.01

Gene sequence:

>1287_bases
ATGACATCGCATACAACAACCAAGCCGGTAAGGGTGCTGCACATAGTCGGAGAATCCCGCTACGGAGGGGCCGCTAAAAT
CATCCTGCCGCTCGGGCAGATCGCCCAGGCGGAAGGGTGGGAGGTCGATATTCTGGCGACCGATCCGATCTTCCAACACG
CCGTCAAAAAATATGGCCTGGGCTTGTTGAGCCTGGATGTCATCCGGCGGGAGATTCGGCCGGTCTGGGACCTGGGCGGC
CTCGCGCGGCTAACCAGGTTCCTCCGCACCGAACGCTACCAGATCGTGCATACCCATACCTCCAAGGCGGGCTTCGTGGG
ACGGCTCGCCGCGCGCCTGGCCGGAGTGCCGGTGATTGTGCACACCGCGCACGGATTCGCATTCCACGAGCAGAGTCCGG
CATCCGTTCGCCGCGTTTACACCGCGTTGGAGCGGCTGGCTACGCGGTGGTGCGACCGGGTGATTTCGGTGAGCGAGTTT
CACCGCACGTGGGCCATCGAGCTCGGGATGTGCACTCCGGAGCAGATCATGGCGATACCCAACGGGATCACGGACATCAG
CAGAAGCCGGGAGATCGCGGTCGCGGAACTTCGCCGCGAAATGGGCGCGCGGAACGATGACCTGGTGGCTCTGAGCATGG
CCAGGCTGGCGTCGGACAAAGGCCTGGAACACCTCATTGAAGCGGCGGCAATCATGCCGCAGAAACCGCGCCGCATCCAG
GTTGTGATCGCCGGCGACGGGCCGGAGCGCGAACATCTGGAGCAAGTGGCCACCAGGCTGGGCGTAAATGAGCGCGTAAA
GTTTCTCGGCTTTCGTGAGGATGTACCCGATTTGCTTGCGGCCAGCGACATGGTGGTGCTGCCCAGTTTGCGGGAAGGTC
TCTCCATAGCCATGTTGGAAGCCATGGCGGCCGGGAAGCCGATCGTCGCGACCAATATCGGAAGCCAGAAAGAGGTCGCG
GCCCACGCCGATATCGCGCGGCTTGTCCCGCCGGCGGATGCACGCGCGCTGAGCGACGCCATTCAGCGGCTGGCAAGCGA
CGCGCAGTTGATGGCGCAGCTCGGGAGCAATGCGCGTGCCGTGTATGAGAGCCGCTACACCGAGCACAAGATGCTGGATA
CTTACCGGCAGCTGTATATCGACCTGCTGCGCGCGAAGTGTCCCAGGCAGGCAGTCAGGGCCGTCCCGGTACACCATTGG
GGACCGGGAGCGCCTGAAGCGCCGGCAACCCAAACCTATTCCGAATTGATTTCCACGCCTCGAGAGACGAAGGGCGGAGT
TCTATGA

Upstream 100 bases:

>100_bases
TGGGCGCGGCCGTAGTGGGTTGGCTGCTGCGCGCTCCCGCCGGGAGCGCAGTGGGTTCGCAGGCCGCACCGGCCTGCGCG
GACGATTGGGAAGCGAGCTT

Downstream 100 bases:

>100_bases
CGCAAACCTACCCGACCGACGAACCGCCCTCGACAAGCGGCGGCCGGCGCATTGTCCGCGTTGCCAGGGTCGGCGACCTT
CCGGGAATCGTGGATATTCA

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MTSHTTTKPVRVLHIVGESRYGGAAKIILPLGQIAQAEGWEVDILATDPIFQHAVKKYGLGLLSLDVIRREIRPVWDLGG
LARLTRFLRTERYQIVHTHTSKAGFVGRLAARLAGVPVIVHTAHGFAFHEQSPASVRRVYTALERLATRWCDRVISVSEF
HRTWAIELGMCTPEQIMAIPNGITDISRSREIAVAELRREMGARNDDLVALSMARLASDKGLEHLIEAAAIMPQKPRRIQ
VVIAGDGPEREHLEQVATRLGVNERVKFLGFREDVPDLLAASDMVVLPSLREGLSIAMLEAMAAGKPIVATNIGSQKEVA
AHADIARLVPPADARALSDAIQRLASDAQLMAQLGSNARAVYESRYTEHKMLDTYRQLYIDLLRAKCPRQAVRAVPVHHW
GPGAPEAPATQTYSELISTPRETKGGVL

Sequences:

>Translated_428_residues
MTSHTTTKPVRVLHIVGESRYGGAAKIILPLGQIAQAEGWEVDILATDPIFQHAVKKYGLGLLSLDVIRREIRPVWDLGG
LARLTRFLRTERYQIVHTHTSKAGFVGRLAARLAGVPVIVHTAHGFAFHEQSPASVRRVYTALERLATRWCDRVISVSEF
HRTWAIELGMCTPEQIMAIPNGITDISRSREIAVAELRREMGARNDDLVALSMARLASDKGLEHLIEAAAIMPQKPRRIQ
VVIAGDGPEREHLEQVATRLGVNERVKFLGFREDVPDLLAASDMVVLPSLREGLSIAMLEAMAAGKPIVATNIGSQKEVA
AHADIARLVPPADARALSDAIQRLASDAQLMAQLGSNARAVYESRYTEHKMLDTYRQLYIDLLRAKCPRQAVRAVPVHHW
GPGAPEAPATQTYSELISTPRETKGGVL
>Mature_427_residues
TSHTTTKPVRVLHIVGESRYGGAAKIILPLGQIAQAEGWEVDILATDPIFQHAVKKYGLGLLSLDVIRREIRPVWDLGGL
ARLTRFLRTERYQIVHTHTSKAGFVGRLAARLAGVPVIVHTAHGFAFHEQSPASVRRVYTALERLATRWCDRVISVSEFH
RTWAIELGMCTPEQIMAIPNGITDISRSREIAVAELRREMGARNDDLVALSMARLASDKGLEHLIEAAAIMPQKPRRIQV
VIAGDGPEREHLEQVATRLGVNERVKFLGFREDVPDLLAASDMVVLPSLREGLSIAMLEAMAAGKPIVATNIGSQKEVAA
HADIARLVPPADARALSDAIQRLASDAQLMAQLGSNARAVYESRYTEHKMLDTYRQLYIDLLRAKCPRQAVRAVPVHHWG
PGAPEAPATQTYSELISTPRETKGGVL

Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles. Required for biofilm maintenance [H]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

Organism=Homo sapiens, GI11863130, Length=339, Percent_Identity=25.3687315634218, Blast_Score=75, Evalue=9e-14,
Organism=Escherichia coli, GI1790061, Length=213, Percent_Identity=27.2300469483568, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17532709, Length=273, Percent_Identity=24.1758241758242, Blast_Score=75, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI9755344, Length=257, Percent_Identity=25.6809338521401, Blast_Score=73, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 47088; Mature: 46957

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS00018 EF_HAND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSHTTTKPVRVLHIVGESRYGGAAKIILPLGQIAQAEGWEVDILATDPIFQHAVKKYGL
CCCCCCCCCEEEEEEECCCCCCCCEEEEEEHHHHHCCCCCEEEEEECCHHHHHHHHHHCC
GLLSLDVIRREIRPVWDLGGLARLTRFLRTERYQIVHTHTSKAGFVGRLAARLAGVPVIV
CHHHHHHHHHHHCHHHCCCHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEE
HTAHGFAFHEQSPASVRRVYTALERLATRWCDRVISVSEFHRTWAIELGMCTPEQIMAIP
EECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHCC
NGITDISRSREIAVAELRREMGARNDDLVALSMARLASDKGLEHLIEAAAIMPQKPRRIQ
CCCHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEE
VVIAGDGPEREHLEQVATRLGVNERVKFLGFREDVPDLLAASDMVVLPSLREGLSIAMLE
EEEECCCCCHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHCCCEEECCCHHCCHHHHHHH
AMAAGKPIVATNIGSQKEVAAHADIARLVPPADARALSDAIQRLASDAQLMAQLGSNARA
HHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VYESRYTEHKMLDTYRQLYIDLLRAKCPRQAVRAVPVHHWGPGAPEAPATQTYSELISTP
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCC
RETKGGVL
CCCCCCCC
>Mature Secondary Structure 
TSHTTTKPVRVLHIVGESRYGGAAKIILPLGQIAQAEGWEVDILATDPIFQHAVKKYGL
CCCCCCCCEEEEEEECCCCCCCCEEEEEEHHHHHCCCCCEEEEEECCHHHHHHHHHHCC
GLLSLDVIRREIRPVWDLGGLARLTRFLRTERYQIVHTHTSKAGFVGRLAARLAGVPVIV
CHHHHHHHHHHHCHHHCCCHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCEEE
HTAHGFAFHEQSPASVRRVYTALERLATRWCDRVISVSEFHRTWAIELGMCTPEQIMAIP
EECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHCC
NGITDISRSREIAVAELRREMGARNDDLVALSMARLASDKGLEHLIEAAAIMPQKPRRIQ
CCCHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEE
VVIAGDGPEREHLEQVATRLGVNERVKFLGFREDVPDLLAASDMVVLPSLREGLSIAMLE
EEEECCCCCHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHCCCEEECCCHHCCHHHHHHH
AMAAGKPIVATNIGSQKEVAAHADIARLVPPADARALSDAIQRLASDAQLMAQLGSNARA
HHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VYESRYTEHKMLDTYRQLYIDLLRAKCPRQAVRAVPVHHWGPGAPEAPATQTYSELISTP
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCC
RETKGGVL
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969506; 9384377 [H]