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The map label for this gene is capF [H]

Identifier: 116623944

GI number: 116623944

Start: 6133526

End: 6134866

Strand: Direct

Name: capF [H]

Synonym: Acid_4856

Alternate gene names: 116623944

Gene position: 6133526-6134866 (Clockwise)

Preceding gene: 116623943

Following gene: 116623945

Centisome position: 61.55

GC content: 63.91

Gene sequence:

>1341_bases
GTGAGTACAAAAGAGATTTTCGCGCTGGACATGCACGGTGTTGCAGAGCCGGCGACGCCGGGACTCTCGCTGCGATCGAA
CTTCGCGTGGGTCCTCACGGGCAACGTAGTGTACGCCGCGTGCCAGTGGGGCATGATCGTGGCGCTCGCAAAATTGGGCA
GCTCATTCATGATCGGGCAGTTCTCGCTGGGAGTGGCGATCGCTTCGCCGGTACTGATGTTCACCAACCTTCATCTGAAG
GCGGTGCAGGCGACCGACGCCCTACGCATGACTTCCTTCGCCGAGTATCTGCGGCTGCGCGGCGTGATGACGCTGTGCGG
CCTGGCGGTAATTGCAGGGATTGCGTGTTTTGGAAACTACGAGCCACAGACGAGGCTGGTGATTCTGACGGTAGCGCTCG
CTAAAGGCATCGAAACCCTGAGCGACATTCATTACGGGCTGTTTCAGCTGAACGATCGCCTGGATCAGGTCGGCAGGTCC
ATGATGCTGCGCGGCGCGCTCTCGGTGGCGGCGCTGAGCACGGGATTGTACGTGACGCGCAGTGTGCTGGGCGGCTGCGT
CGGGCTGGCGCTGGTGTGGCTGGGCGCGCTGCTGTTCTTCGACGTGCCGCGGGGACGACGATTCGCAGTGGCTTCGGAAG
GAGAGCGGGGATTGCGCCGATCGTGGAGTCTGATGTGGATGGCGCTGCCGCTGGGCATTTCGACCACGATGGCGGCGTTG
AATCTCAATATGCCGCGCTATTTCATTCACGCGCGATTGGGGGAACGCCAGCTCGGCATCTATTCGGCGATGGCGTACGC
GACGGTGGCGATGATCCTGGTGGCCGATTCGTTAGGGCATTGCGCAATCCCGCGGATGTCCCGGCTCTACACGGCCGGCA
GGCTCACGGAATTTCGATCTCTGCTGCTGAAGCTGCTGGCAGCGGGGGGCACGCTGGGACTCGCCGGCCTGGTGGTGGCT
CAGGTAATGGGAGTGCGGCTGCTCACTCTGTTGTACGGCCACGAGTACGCGGCTCACTACCGGGTCTTCCTGGTGTTGAT
CCTGGCGACGGCGATCTATTGCGTGGCGAGTATGTTCACGAGCGCGATCACGTCGGCGAGGCGTTTCCGGATCCAGGTAC
CGCTGTACGCGCTGGTGGCCGGGTCGAACGCGATTGCGTGCTCGCGATGGATTCCCTCGGCGGGCCTGGCGGGCGGCGCC
GCGGCCATGGCGGTAGCGGCGATGACGCACTTAGTGTTGGGCGCGGCCGTAGTGGGTTGGCTGCTGCGCGCTCCCGCCGG
GAGCGCAGTGGGTTCGCAGGCCGCACCGGCCTGCGCGGACGATTGGGAAGCGAGCTTATGA

Upstream 100 bases:

>100_bases
TGCTGCTGGACGGGATTTCCGTAATGGGAGTCATCTTCAATTACTGGGATCCGACGGTTAACGACCTGTACAGCTACGCC
CAGTACCACCAGGATATTGC

Downstream 100 bases:

>100_bases
CATCGCATACAACAACCAAGCCGGTAAGGGTGCTGCACATAGTCGGAGAATCCCGCTACGGAGGGGCCGCTAAAATCATC
CTGCCGCTCGGGCAGATCGC

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MSTKEIFALDMHGVAEPATPGLSLRSNFAWVLTGNVVYAACQWGMIVALAKLGSSFMIGQFSLGVAIASPVLMFTNLHLK
AVQATDALRMTSFAEYLRLRGVMTLCGLAVIAGIACFGNYEPQTRLVILTVALAKGIETLSDIHYGLFQLNDRLDQVGRS
MMLRGALSVAALSTGLYVTRSVLGGCVGLALVWLGALLFFDVPRGRRFAVASEGERGLRRSWSLMWMALPLGISTTMAAL
NLNMPRYFIHARLGERQLGIYSAMAYATVAMILVADSLGHCAIPRMSRLYTAGRLTEFRSLLLKLLAAGGTLGLAGLVVA
QVMGVRLLTLLYGHEYAAHYRVFLVLILATAIYCVASMFTSAITSARRFRIQVPLYALVAGSNAIACSRWIPSAGLAGGA
AAMAVAAMTHLVLGAAVVGWLLRAPAGSAVGSQAAPACADDWEASL

Sequences:

>Translated_446_residues
MSTKEIFALDMHGVAEPATPGLSLRSNFAWVLTGNVVYAACQWGMIVALAKLGSSFMIGQFSLGVAIASPVLMFTNLHLK
AVQATDALRMTSFAEYLRLRGVMTLCGLAVIAGIACFGNYEPQTRLVILTVALAKGIETLSDIHYGLFQLNDRLDQVGRS
MMLRGALSVAALSTGLYVTRSVLGGCVGLALVWLGALLFFDVPRGRRFAVASEGERGLRRSWSLMWMALPLGISTTMAAL
NLNMPRYFIHARLGERQLGIYSAMAYATVAMILVADSLGHCAIPRMSRLYTAGRLTEFRSLLLKLLAAGGTLGLAGLVVA
QVMGVRLLTLLYGHEYAAHYRVFLVLILATAIYCVASMFTSAITSARRFRIQVPLYALVAGSNAIACSRWIPSAGLAGGA
AAMAVAAMTHLVLGAAVVGWLLRAPAGSAVGSQAAPACADDWEASL
>Mature_445_residues
STKEIFALDMHGVAEPATPGLSLRSNFAWVLTGNVVYAACQWGMIVALAKLGSSFMIGQFSLGVAIASPVLMFTNLHLKA
VQATDALRMTSFAEYLRLRGVMTLCGLAVIAGIACFGNYEPQTRLVILTVALAKGIETLSDIHYGLFQLNDRLDQVGRSM
MLRGALSVAALSTGLYVTRSVLGGCVGLALVWLGALLFFDVPRGRRFAVASEGERGLRRSWSLMWMALPLGISTTMAALN
LNMPRYFIHARLGERQLGIYSAMAYATVAMILVADSLGHCAIPRMSRLYTAGRLTEFRSLLLKLLAAGGTLGLAGLVVAQ
VMGVRLLTLLYGHEYAAHYRVFLVLILATAIYCVASMFTSAITSARRFRIQVPLYALVAGSNAIACSRWIPSAGLAGGAA
AMAVAAMTHLVLGAAVVGWLLRAPAGSAVGSQAAPACADDWEASL

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 47403; Mature: 47272

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKEIFALDMHGVAEPATPGLSLRSNFAWVLTGNVVYAACQWGMIVALAKLGSSFMIGQ
CCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEHHHHHHHHHHHHCCCCEEEEH
FSLGVAIASPVLMFTNLHLKAVQATDALRMTSFAEYLRLRGVMTLCGLAVIAGIACFGNY
HHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EPQTRLVILTVALAKGIETLSDIHYGLFQLNDRLDQVGRSMMLRGALSVAALSTGLYVTR
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVLGGCVGLALVWLGALLFFDVPRGRRFAVASEGERGLRRSWSLMWMALPLGISTTMAAL
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHH
NLNMPRYFIHARLGERQLGIYSAMAYATVAMILVADSLGHCAIPRMSRLYTAGRLTEFRS
CCCCCHHEEEHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LLLKLLAAGGTLGLAGLVVAQVMGVRLLTLLYGHEYAAHYRVFLVLILATAIYCVASMFT
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SAITSARRFRIQVPLYALVAGSNAIACSRWIPSAGLAGGAAAMAVAAMTHLVLGAAVVGW
HHHHHHHHEEEECCEEEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LLRAPAGSAVGSQAAPACADDWEASL
HHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STKEIFALDMHGVAEPATPGLSLRSNFAWVLTGNVVYAACQWGMIVALAKLGSSFMIGQ
CCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEHHHHHHHHHHHHCCCCEEEEH
FSLGVAIASPVLMFTNLHLKAVQATDALRMTSFAEYLRLRGVMTLCGLAVIAGIACFGNY
HHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EPQTRLVILTVALAKGIETLSDIHYGLFQLNDRLDQVGRSMMLRGALSVAALSTGLYVTR
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVLGGCVGLALVWLGALLFFDVPRGRRFAVASEGERGLRRSWSLMWMALPLGISTTMAAL
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHH
NLNMPRYFIHARLGERQLGIYSAMAYATVAMILVADSLGHCAIPRMSRLYTAGRLTEFRS
CCCCCHHEEEHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
LLLKLLAAGGTLGLAGLVVAQVMGVRLLTLLYGHEYAAHYRVFLVLILATAIYCVASMFT
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SAITSARRFRIQVPLYALVAGSNAIACSRWIPSAGLAGGAAAMAVAAMTHLVLGAAVVGW
HHHHHHHHEEEECCEEEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LLRAPAGSAVGSQAAPACADDWEASL
HHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]