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The map label for this gene is 116623830

Identifier: 116623830

GI number: 116623830

Start: 6001079

End: 6001618

Strand: Direct

Name: 116623830

Synonym: Acid_4742

Alternate gene names: NA

Gene position: 6001079-6001618 (Clockwise)

Preceding gene: 116623818

Following gene: 116623831

Centisome position: 60.22

GC content: 65.19

Gene sequence:

>540_bases
GTGACTACCTTAGTTGTGGACGGTGAGCAGGACGGGCGATACCGGGCGGCGGCGGCGGAATATGGGGCGGCGATCGAGAG
GTTGGCGCGCGCATATGAGGCCGACCCGGATTGGCGGCGCGATTTAGTGCAGGAGATTCACCTGGCGTTGTGGCGCAGCT
TTGCGGGGTGGGAGGGGCGCTGCTCGGTGCGCACGTGGGTTTACCGGGTGGCGCACAATGCGGCGACCTCGCATGTGATC
CGGCAGCGGCGGACGAATGCGCACGTGCTGGTGAGCGTGGAGGAGTTGGAGGCTGCGCCGGACAGCGTGAATGCGGAGGA
GGCGGCGGGCCAGAGGGCGGCGCTCGACCGGCTGCTCGGGCTGGTGCAGCAGTTGAAGCCACTCGACCGGCAGGTGATCC
TGGGATATCTCGAAGGATTGGACGCGGCGTCGATCGGCGAGATCACGGGACTCGCTCCGGGGAATGTCGCGACCAAAATC
CACCGCATCAAAAATCTGTTGAGCCGTCAATTTCATCAGGGGGTGCGCCATGGCGAATGA

Upstream 100 bases:

>100_bases
AGACTATATATGACTACGGCCGAGGGTGCGATGTAAAGCGGGGGATCGCAGAACGCTCCCTTACGGTCGCGGTTCGCGGT
GTAAGAAACGGGTGGGGTGG

Downstream 100 bases:

>100_bases
CGATCCGATGCGCTTGTGGCAGCAGCAGCCGCTGGAGAATGCCGGTGTGCAATTGGAGGATCTGCGCCGCCGGGCGGGGA
AATTCAAGAAGAGGATTCAG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase Ecf-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MTTLVVDGEQDGRYRAAAAEYGAAIERLARAYEADPDWRRDLVQEIHLALWRSFAGWEGRCSVRTWVYRVAHNAATSHVI
RQRRTNAHVLVSVEELEAAPDSVNAEEAAGQRAALDRLLGLVQQLKPLDRQVILGYLEGLDAASIGEITGLAPGNVATKI
HRIKNLLSRQFHQGVRHGE

Sequences:

>Translated_179_residues
MTTLVVDGEQDGRYRAAAAEYGAAIERLARAYEADPDWRRDLVQEIHLALWRSFAGWEGRCSVRTWVYRVAHNAATSHVI
RQRRTNAHVLVSVEELEAAPDSVNAEEAAGQRAALDRLLGLVQQLKPLDRQVILGYLEGLDAASIGEITGLAPGNVATKI
HRIKNLLSRQFHQGVRHGE
>Mature_178_residues
TTLVVDGEQDGRYRAAAAEYGAAIERLARAYEADPDWRRDLVQEIHLALWRSFAGWEGRCSVRTWVYRVAHNAATSHVIR
QRRTNAHVLVSVEELEAAPDSVNAEEAAGQRAALDRLLGLVQQLKPLDRQVILGYLEGLDAASIGEITGLAPGNVATKIH
RIKNLLSRQFHQGVRHGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19882; Mature: 19750

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLVVDGEQDGRYRAAAAEYGAAIERLARAYEADPDWRRDLVQEIHLALWRSFAGWEGR
CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
CSVRTWVYRVAHNAATSHVIRQRRTNAHVLVSVEELEAAPDSVNAEEAAGQRAALDRLLG
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LVQQLKPLDRQVILGYLEGLDAASIGEITGLAPGNVATKIHRIKNLLSRQFHQGVRHGE
HHHHHCHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TTLVVDGEQDGRYRAAAAEYGAAIERLARAYEADPDWRRDLVQEIHLALWRSFAGWEGR
CEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
CSVRTWVYRVAHNAATSHVIRQRRTNAHVLVSVEELEAAPDSVNAEEAAGQRAALDRLLG
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LVQQLKPLDRQVILGYLEGLDAASIGEITGLAPGNVATKIHRIKNLLSRQFHQGVRHGE
HHHHHCHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA