| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is lgrB [H]
Identifier: 116623804
GI number: 116623804
Start: 5969551
End: 5971506
Strand: Reverse
Name: lgrB [H]
Synonym: Acid_4716
Alternate gene names: 116623804
Gene position: 5971506-5969551 (Counterclockwise)
Preceding gene: 116623806
Following gene: 116623803
Centisome position: 59.92
GC content: 67.23
Gene sequence:
>1956_bases ATGCGCGAGCTAGGTCTCCCCGGCGAAATTCGTTTTGCCGCCTACAATCAGGTTTTTCAAGAACTTCTGGACCCCGCCGG ACTCTTCGCGCGCAATACGACGGGCGCGAATATCGTTCTCGTCCGCTTCGAGGATTGGACCTTGGGACAGGCCGGCGAGT TCGTTGACGCCGTGCGCGCGGCGGCCGGCCGCCTGGCGGTTCCGCTGCTCATCGTCCTTTGCGCGGGCACTGGCGAGTTC GACGACCGGATGCGCGCGAGTGTCGCCGGGCTGCCCTCCGTTCACCTGATCACGGCCGCCGAGATCGCCGCGCTCTATCC CGTCCGAGACCTGCACGATCCGCACGCGAATGAACTCGGCCACGTGCCCTACACGCCGCTGTACTTCGTGGCACTGGCCA CCGCCATCGCGCGCAAAATCCACGCCATCACGGCGCCGCCCTTCAAGGTGATTGCGCTCGATTGCGACGACACGCTGTGG GCGGGCATCTGCGGCGAGGATGGGCCCGAGGGTGTGGTGCTCGATCCGCCGCGCCTGGCCCTGCAGCAGTTCATGCGCGC GCGCCGCCAGGAGGGCATGCTGCTGGCGCTTTGCAGCAAGAACAATGAAGAGGATGTCGCCGCCACCTTCGCCGCGCATC CCGAGATGCCGCTCCGGTTGGAGGATTTCGCCGCGCAGCGCGTCAACTGGGAGACCAAGGGCGCCAACCTGGTCTCGCTC GCCGACGAACTCGATCTCGGGCTGGACAGCGTCATCCTGATTGACGACAATCCCAAGGAAGTCACCGAGGCGCAGGCCGG CGCTCCGCAGGCGCTGGCGATTGCGCTGCCCGAGCGGGCCGCGGAGATCCCGGAGTTCCTGCGCCACGTCTGGGCCTTCG ACCGCGCCCGCGTCACGGAAGAAGACCGGCGGCGTCCCGAGCTCTACGCGCAGCGCGCGGAGCGTGTGCGCGCGCAGCGC AGTTCCGCCAGCCTTGAGGAATTTCTCGCTTCGCTGAAACTCGAGGTCGCGATCGCTCCCCTGGAGGCCGCGCAGGCCGA CCGGGTGGCGCAACTCACGCAGCGCACCAACCAGATGAACGCGACCTGCATCCGGCGCACCGCCGCCGAGATCCAGCGCC TGGCCGCGGAGTGCCTCACGGTTAAGGTAACCGACCGTTTCGGCAGCTATGGACTGACCGGGGTCATCCTCTTTCGCACC GATGCCACGGCGCTCATCGTGGACACCTTCCTGCTCAGTTGCCGCGCTTTGGGCCGCGGCGTGGAGCACCGGATGGTGGC GCGGCTTGGCGAAATCGCCCAGGAGCGCGGCCTGAAGCGTGTCGAGCTTCCCTTTGTCGAAGGCCAGCGCAATCGGCCGG CTCTGCTCTTCCTGCAATCGCTGGCCGCGCAGGATCCCGATGGCGTTTTCCGCCTTGACGCAGCGCGGGCGTCCCAGGTG CGATATCAACCCGGGGCGGGGAAGCCGGCCGACCTGCCCGCCGGGGAGGGCCGCCCCGCGGCGGCCGTGCCGTTGCGCAT TCCGTACGCCCGCATCGCCGCCGAATTGCGCGAGCCCGAGATGATTCTGGCGCACATCCGCGCGACTTCGCGGCGCGCTG CCGGCATTCGTGATGTCGAGCCGCCGCGCACCGCGTTGGAGCGCGATCTGGTGGAGCTCTGGGCCGAGCTGCTCAACGTG GAGGCGCTCGGCGTACACGAGAACTTCTTCGAACTCGGAGGCCATTCCCTGCTCGCGGTACAGCTGCTTTCGCGCGTGCG CCAACTCTACGGAGTGGAGCTTTCGCTCGAGGTGGTGTACTCCGGAGAGTTCACGGTGGCCGAGCTGGCGAAGGCGATCG AGCTCAAGGAGATCGAACACTCCGGCGGGGATTATCACGAACTGCTCCAGGAACTCGACGGCCTCAGCGACGAGGAAGTG CGCGCACTTCTGGCTGAAGAGCAGGATGCCTCATAG
Upstream 100 bases:
>100_bases TTCGGGCGAGGCCATAAGGCCTTCAATATAATGGAATTTGCAGATCGCGATCAGCGCCACCTTCACCGCCGAAGCCATCC AGCCCGGATTGTCTTTCTGG
Downstream 100 bases:
>100_bases CGCATGCGGATTCTGTTGACGGCGAATGCAAGTTACGTGCCGCCGCGCGGCGGCGCTACGCGCAGCAATCTGATCTGGAT GGACCAGATGGCCGGCGCGG
Product: FkbH like protein
Products: NA
Alternate protein names: ATP-dependent alanine adenylase; AlaA; Alanine activase; ATP-dependent D-leucine adenylase; D-LeuA; D-leucine activase; Leucine racemase [ATP-hydrolyzing]; ATP-dependent alanine adenylase; AlaA; Alanine activase; ATP-dependent D-valine adenylase; D-ValA; D-valine activase; Valine racemase [ATP-hydrolyzing] [H]
Number of amino acids: Translated: 651; Mature: 651
Protein sequence:
>651_residues MRELGLPGEIRFAAYNQVFQELLDPAGLFARNTTGANIVLVRFEDWTLGQAGEFVDAVRAAAGRLAVPLLIVLCAGTGEF DDRMRASVAGLPSVHLITAAEIAALYPVRDLHDPHANELGHVPYTPLYFVALATAIARKIHAITAPPFKVIALDCDDTLW AGICGEDGPEGVVLDPPRLALQQFMRARRQEGMLLALCSKNNEEDVAATFAAHPEMPLRLEDFAAQRVNWETKGANLVSL ADELDLGLDSVILIDDNPKEVTEAQAGAPQALAIALPERAAEIPEFLRHVWAFDRARVTEEDRRRPELYAQRAERVRAQR SSASLEEFLASLKLEVAIAPLEAAQADRVAQLTQRTNQMNATCIRRTAAEIQRLAAECLTVKVTDRFGSYGLTGVILFRT DATALIVDTFLLSCRALGRGVEHRMVARLGEIAQERGLKRVELPFVEGQRNRPALLFLQSLAAQDPDGVFRLDAARASQV RYQPGAGKPADLPAGEGRPAAAVPLRIPYARIAAELREPEMILAHIRATSRRAAGIRDVEPPRTALERDLVELWAELLNV EALGVHENFFELGGHSLLAVQLLSRVRQLYGVELSLEVVYSGEFTVAELAKAIELKEIEHSGGDYHELLQELDGLSDEEV RALLAEEQDAS
Sequences:
>Translated_651_residues MRELGLPGEIRFAAYNQVFQELLDPAGLFARNTTGANIVLVRFEDWTLGQAGEFVDAVRAAAGRLAVPLLIVLCAGTGEF DDRMRASVAGLPSVHLITAAEIAALYPVRDLHDPHANELGHVPYTPLYFVALATAIARKIHAITAPPFKVIALDCDDTLW AGICGEDGPEGVVLDPPRLALQQFMRARRQEGMLLALCSKNNEEDVAATFAAHPEMPLRLEDFAAQRVNWETKGANLVSL ADELDLGLDSVILIDDNPKEVTEAQAGAPQALAIALPERAAEIPEFLRHVWAFDRARVTEEDRRRPELYAQRAERVRAQR SSASLEEFLASLKLEVAIAPLEAAQADRVAQLTQRTNQMNATCIRRTAAEIQRLAAECLTVKVTDRFGSYGLTGVILFRT DATALIVDTFLLSCRALGRGVEHRMVARLGEIAQERGLKRVELPFVEGQRNRPALLFLQSLAAQDPDGVFRLDAARASQV RYQPGAGKPADLPAGEGRPAAAVPLRIPYARIAAELREPEMILAHIRATSRRAAGIRDVEPPRTALERDLVELWAELLNV EALGVHENFFELGGHSLLAVQLLSRVRQLYGVELSLEVVYSGEFTVAELAKAIELKEIEHSGGDYHELLQELDGLSDEEV RALLAEEQDAS >Mature_651_residues MRELGLPGEIRFAAYNQVFQELLDPAGLFARNTTGANIVLVRFEDWTLGQAGEFVDAVRAAAGRLAVPLLIVLCAGTGEF DDRMRASVAGLPSVHLITAAEIAALYPVRDLHDPHANELGHVPYTPLYFVALATAIARKIHAITAPPFKVIALDCDDTLW AGICGEDGPEGVVLDPPRLALQQFMRARRQEGMLLALCSKNNEEDVAATFAAHPEMPLRLEDFAAQRVNWETKGANLVSL ADELDLGLDSVILIDDNPKEVTEAQAGAPQALAIALPERAAEIPEFLRHVWAFDRARVTEEDRRRPELYAQRAERVRAQR SSASLEEFLASLKLEVAIAPLEAAQADRVAQLTQRTNQMNATCIRRTAAEIQRLAAECLTVKVTDRFGSYGLTGVILFRT DATALIVDTFLLSCRALGRGVEHRMVARLGEIAQERGLKRVELPFVEGQRNRPALLFLQSLAAQDPDGVFRLDAARASQV RYQPGAGKPADLPAGEGRPAAAVPLRIPYARIAAELREPEMILAHIRATSRRAAGIRDVEPPRTALERDLVELWAELLNV EALGVHENFFELGGHSLLAVQLLSRVRQLYGVELSLEVVYSGEFTVAELAKAIELKEIEHSGGDYHELLQELDGLSDEEV RALLAEEQDAS
Specific function: Activates the 3rd to 6th amino acids (Ala, D-Leu, Ala and D-Val) in linear gramicidin and catalyzes the formation of the peptide bond between them. This enzyme is also responsible for the epimerization of the 4th (D-Leu) and the 6th (D-Val) amino acids [H
COG id: COG3882
COG function: function code Q; Predicted enzyme involved in methoxymalonyl-ACP biosynthesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 acyl carrier domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010071 - InterPro: IPR009081 - InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR001242 - InterPro: IPR010060 - InterPro: IPR006163 - InterPro: IPR020806 - InterPro: IPR006162 [H]
Pfam domain/function: PF00501 AMP-binding; PF00668 Condensation; PF00550 PP-binding [H]
EC number: NA
Molecular weight: Translated: 71399; Mature: 71399
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS50075 ACP_DOMAIN ; PS00228 TUBULIN_B_AUTOREG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRELGLPGEIRFAAYNQVFQELLDPAGLFARNTTGANIVLVRFEDWTLGQAGEFVDAVRA CCCCCCCCCCHHHHHHHHHHHHHCCHHHEEECCCCCEEEEEEECCCCCCCHHHHHHHHHH AAGRLAVPLLIVLCAGTGEFDDRMRASVAGLPSVHLITAAEIAALYPVRDLHDPHANELG HHCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHCCHHHCCCCCCCCCC HVPYTPLYFVALATAIARKIHAITAPPFKVIALDCDDTLWAGICGEDGPEGVVLDPPRLA CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEECCCCCCCCCCEEECCHHHH LQQFMRARRQEGMLLALCSKNNEEDVAATFAAHPEMPLRLEDFAAQRVNWETKGANLVSL HHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHH ADELDLGLDSVILIDDNPKEVTEAQAGAPQALAIALPERAAEIPEFLRHVWAFDRARVTE HHHHCCCCCEEEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCH EDRRRPELYAQRAERVRAQRSSASLEEFLASLKLEVAIAPLEAAQADRVAQLTQRTNQMN HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHH ATCIRRTAAEIQRLAAECLTVKVTDRFGSYGLTGVILFRTDATALIVDTFLLSCRALGRG HHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCC VEHRMVARLGEIAQERGLKRVELPFVEGQRNRPALLFLQSLAAQDPDGVFRLDAARASQV HHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECHHHHCE RYQPGAGKPADLPAGEGRPAAAVPLRIPYARIAAELREPEMILAHIRATSRRAAGIRDVE EECCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC PPRTALERDLVELWAELLNVEALGVHENFFELGGHSLLAVQLLSRVRQLYGVELSLEVVY CHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEEE SGEFTVAELAKAIELKEIEHSGGDYHELLQELDGLSDEEVRALLAEEQDAS CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure MRELGLPGEIRFAAYNQVFQELLDPAGLFARNTTGANIVLVRFEDWTLGQAGEFVDAVRA CCCCCCCCCCHHHHHHHHHHHHHCCHHHEEECCCCCEEEEEEECCCCCCCHHHHHHHHHH AAGRLAVPLLIVLCAGTGEFDDRMRASVAGLPSVHLITAAEIAALYPVRDLHDPHANELG HHCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHCCHHHCCCCCCCCCC HVPYTPLYFVALATAIARKIHAITAPPFKVIALDCDDTLWAGICGEDGPEGVVLDPPRLA CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEECCCCCCCCCCEEECCHHHH LQQFMRARRQEGMLLALCSKNNEEDVAATFAAHPEMPLRLEDFAAQRVNWETKGANLVSL HHHHHHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHH ADELDLGLDSVILIDDNPKEVTEAQAGAPQALAIALPERAAEIPEFLRHVWAFDRARVTE HHHHCCCCCEEEEECCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCH EDRRRPELYAQRAERVRAQRSSASLEEFLASLKLEVAIAPLEAAQADRVAQLTQRTNQMN HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHH ATCIRRTAAEIQRLAAECLTVKVTDRFGSYGLTGVILFRTDATALIVDTFLLSCRALGRG HHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCC VEHRMVARLGEIAQERGLKRVELPFVEGQRNRPALLFLQSLAAQDPDGVFRLDAARASQV HHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECHHHHCE RYQPGAGKPADLPAGEGRPAAAVPLRIPYARIAAELREPEMILAHIRATSRRAAGIRDVE EECCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC PPRTALERDLVELWAELLNVEALGVHENFFELGGHSLLAVQLLSRVRQLYGVELSLEVVY CHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEEE SGEFTVAELAKAIELKEIEHSGGDYHELLQELDGLSDEEVRALLAEEQDAS CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA