Click here to switch to the map view.

The map label for this gene is rfaH [C]

Identifier: 116623748

GI number: 116623748

Start: 5896356

End: 5896895

Strand: Reverse

Name: rfaH [C]

Synonym: Acid_4660

Alternate gene names: 116623748

Gene position: 5896895-5896356 (Counterclockwise)

Preceding gene: 116623749

Following gene: 116623745

Centisome position: 59.17

GC content: 55.74

Gene sequence:

>540_bases
ATGCATCCCCCACAAGCGTTCCTTGGAGAATCGGCAATTGCCGAGCCTGCGCTACCATGGTTCGCCGTAAAAGTCCGGTC
TAACTTCGAAAAAAAGTCCGCAGATATCCTCCGCGAGAAGGGGTATCAGGAGTTCGCACCATCTTATCCATCGCGCCGGT
ATTGGTCTGACCGGGTGAAAGTTATCGACCAGCCCCTATTTCCAGGGTATGTTTTTTGCAGGTTTCACCCAAACCACTTC
TTGCCGGTGTTGCAGACTGCCGGAGTTGTGCAAATTGTCGGTTTCGGGGGCAAACTGGCACCGGTGGATGAAGTGGAGCT
GGCATCTTTGCGGACCCTGATGAATTCATCTCTGCCGATTTCCCAGCGGGAATTTCTGCACGTGGGGCGCAAAGTGTTGA
TCCGGCGCGGGCCCCTGGCGGGAGTGGAAGGTATTTTGGAAGAGATCCGCAAGGGTTACCGCATCGTGGTCTCGATCAGT
CTGCTGCAGCGCTCGGTTACGGCCGAGATCGACGCGAATTGGGTCACGACGGTGCAGTAG

Upstream 100 bases:

>100_bases
ACTATCTCTCATTGAGCTAACTTTCTTATGAGAAAGCCTTAGTACTCACACGACTGCTGGGTCGTTGACAATTGTCCATC
GTCAGCACAGGATTGTTCTT

Downstream 100 bases:

>100_bases
GCCATCATCGCGCCTGCTGGACCGCGCGGAATTGAAAAGCGATTTCGACGACGATATCCACGTCGATTGGCTCTCCGTTG
CGCGAGGCCGGTTGAAACTC

Product: NusG antitermination factor

Products: NA

Alternate protein names: Transcription Antitermination Protein NusG; Transcription Antiterminator; Transcription Termination Factor NusG Domain Protein; Nusg Antitermination Factor; Transcriptional Antiterminator; Transcriptional Regulator; Transcriptional Activator; NusG-Like Protein; NGN Domain Protein; Ngn DomaiN-Containing Protein; Transcription Termination/Antitermination Factor NusG; Transcription Antitermination Protein; NusG/RfaH Family Transcriptional Regulator

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MHPPQAFLGESAIAEPALPWFAVKVRSNFEKKSADILREKGYQEFAPSYPSRRYWSDRVKVIDQPLFPGYVFCRFHPNHF
LPVLQTAGVVQIVGFGGKLAPVDEVELASLRTLMNSSLPISQREFLHVGRKVLIRRGPLAGVEGILEEIRKGYRIVVSIS
LLQRSVTAEIDANWVTTVQ

Sequences:

>Translated_179_residues
MHPPQAFLGESAIAEPALPWFAVKVRSNFEKKSADILREKGYQEFAPSYPSRRYWSDRVKVIDQPLFPGYVFCRFHPNHF
LPVLQTAGVVQIVGFGGKLAPVDEVELASLRTLMNSSLPISQREFLHVGRKVLIRRGPLAGVEGILEEIRKGYRIVVSIS
LLQRSVTAEIDANWVTTVQ
>Mature_179_residues
MHPPQAFLGESAIAEPALPWFAVKVRSNFEKKSADILREKGYQEFAPSYPSRRYWSDRVKVIDQPLFPGYVFCRFHPNHF
LPVLQTAGVVQIVGFGGKLAPVDEVELASLRTLMNSSLPISQREFLHVGRKVLIRRGPLAGVEGILEEIRKGYRIVVSIS
LLQRSVTAEIDANWVTTVQ

Specific function: Transcriptional Activator Of Hemolysin Synthesis And Secretion, Also Required For Expression Of Sex Factor And Lipopolysaccharide Biosynthesis Genes. Transcriptional Activator Of Rfad/Htrm And Htrl. [C]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20158; Mature: 20158

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPPQAFLGESAIAEPALPWFAVKVRSNFEKKSADILREKGYQEFAPSYPSRRYWSDRVK
CCCCHHHHCCHHHCCCCCCCEEEEEHHCCCHHHHHHHHHCCCHHHCCCCCCCHHHHHHHH
VIDQPLFPGYVFCRFHPNHFLPVLQTAGVVQIVGFGGKLAPVDEVELASLRTLMNSSLPI
HHCCCCCCCEEEEEECCCCCHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC
SQREFLHVGRKVLIRRGPLAGVEGILEEIRKGYRIVVSISLLQRSVTAEIDANWVTTVQ
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MHPPQAFLGESAIAEPALPWFAVKVRSNFEKKSADILREKGYQEFAPSYPSRRYWSDRVK
CCCCHHHHCCHHHCCCCCCCEEEEEHHCCCHHHHHHHHHCCCHHHCCCCCCCHHHHHHHH
VIDQPLFPGYVFCRFHPNHFLPVLQTAGVVQIVGFGGKLAPVDEVELASLRTLMNSSLPI
HHCCCCCCCEEEEEECCCCCHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC
SQREFLHVGRKVLIRRGPLAGVEGILEEIRKGYRIVVSISLLQRSVTAEIDANWVTTVQ
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA